SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71852

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene71852
CGTCGTGACCTTGGCTGTCACTCATATTTTGGGATCGCAGGAAATTCTTATCTGCTCCTTGTCCAGACACAGGTGGACATGGCATTAGGAAGGTTTGAGATTGCCGTTGCCAGTGCAGAAAGAGCAGCTCGCATGGATCTATATAATCCCGAGGTAACTGCATTGCTTAGAAAGGCTCGTGCAGTGGCTTATGCTCGCTCAACTGGAAATGCTCTC

Ace file of the UniGene sp_v3.0_unigene71852

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T4H3_RICCO	-	-	2.0e-12	56%
FL-Next	sp=Inactive TPR repeat-containing thioredoxin TTL3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Tetratricopeptide repeat protein, putative	-	-	9.747e-06	-

Source	Gene names
Sma3	RCOM_0197880;

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3		IPR015609	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42580.1	TTL3, VIT tetratricopetide-repeat thioredoxin-like 3 chr2:17728855-17731461 FORWARD LENGTH=691	2.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_565976.1	tetratricopetide-repeat thioredoxin-like 3 [Arabidopsis thaliana]	2.0e-14	53%
RefSeq	Populus trichocarpa	XP_002309983.1	predicted protein, partial [Populus trichocarpa]	3.0e-17	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIN1

Fln msg: Distance to subject end: 223 aas, your sequence is shorter than subject: 72 - 691

Fln protein: RRDLGCHSYFGIAGNSYLLLVQTQVDMALGRFEIAVASAERAARMDLYNPEVTALLRKARAVAYARSTGNAL

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTTGGGATCGCAGGAAATTCTTATCTGCTCCTTGTCCAGACACAGGTGGACATGGCATTAGGAAGGTTTGAGATTGCCGTTGCCAGTGCAGAAAGAGCAGCTCGCATGGATCTATATAATCCCGAGGTAACTGCATTGCTTAGAAAGGCTCGTGCAGTGGCTTATGCTCGCTCAACTGGAAATGCTCTC

Fln Alignment:

GG46A6U02H8GRS___FGIAGNSYLLLVQTQVDMALGRFEIAVASAERAARMDLYNPEVTALLRKARAVAYARSTGNAL
Q9SIN1_______________FGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRARTRGNEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain