SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71814

Length: 118 nt

UniGene Fasta

>sp_v3.0_unigene71814
CGTCGTGACCTTGGCTGTCACTCATTGTTGTTTTTGATTCCTGCGAAGGATTTACAGTGGAGGCCGATGGCTGCATAAAGGACTTGACCATCATCACCGAGTATGTGGGTGATGTGGA

Ace file of the UniGene sp_v3.0_unigene71814

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone-lysine N-methyltransferase n=3 Tax=Andropogoneae RepID=C5XT28_SORBI	-	-	3.0e-07	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	SET domain protein	-	-	2.652e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	1.391e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		1.391e-06	%

Source	Gene names
Sma3	GSVIVT00037225001; OsI_05649; OsJ_05181; P0575F10.5; POPTRDRAFT_250856; POPTRDRAFT_294621; POPTRDRAFT_422428; POPTRDRAFT_802638; RCOM_0939950; RCOM_1460410; SDG928; SDG929; SDG933; SDG941;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SET domain	IPR001214	-	0.0	-
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002318442.1	SET domain protein, partial [Populus trichocarpa]	4.0e-11	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8S0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 100 aas, your sequence is shorter than subject: 38 - 345

Fln protein: S*PWLSLIVVFDSCEGFTVEADGCIKDLTIITEYVGDV

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGTTTTTGATTCCTGCGAAGGATTTACAGTGGAGGCCGATGGCTGCATAAAGGACTTGACCATCATCACCGAGTATGTGGGTGATGTGGA

Fln Alignment:

GG46A6U02JODT6___WLSLIVVFDSCEGFTVEADGCIKDLTIITEYVGDV
D5A8S0_______________WPPLLVVFDSCEGFTVEADGCIKDLTIITEYVGDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain