SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71734

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene71734
CGTCGTGACCTTGGCTGTCACTCAATTTGCTAGGTTCCATTAAAGTACTAGAGAATTCTCTTGAAATAGTACCTGTCATTGCATTGAATGAGAATGTTGTGTTAAATCTTTGTAGTATGTATGAATTGGCATTTGTGAGCAATGTTGAGACCAAGAGATCTCTCAGTTCTTGGATTGTGCAAATTGCACCAGAAGATTTTGATTTGTCCTGTACCCGG

Ace file of the UniGene sp_v3.0_unigene71734

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	64%

Source	Gene names
Sma3	AT4g39820; At4g39820; GSVIVT00019450001; GSVIVT00019452001; OSJNBa0040I22.36; Os02g0550400; OsI_07610; OsJ_07094; P0451A10.24; PHYPADRAFT_149557; PHYPADRAFT_196810; POPTRDRAFT_207537; RCOM_0984660; VITISV_007618; VITISV_029132;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39820.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:18476698-18477924 REVERSE LENGTH=408	1.0e-21	58%
RefSeq	Arabidopsis thaliana	NP_195692.2	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	1.0e-21	58%
RefSeq	Populus trichocarpa	XP_002307110.1	predicted protein, partial [Populus trichocarpa]	6.0e-25	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: I3S8V2

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 72 - 359

Fln protein: S*PWLSLNLLGSIKVLENSLEIVPVIALNENVVLNLCSMYELAFVSNVETKRSLSSWIVQIAPEDFDLSCTR

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGCTAGGTTCCATTAAAGTACTAGAGAATTCTCTTGAAATAGTACCTGTCATTGCATTGAATGAGAATGTTGTGTTAAATCTTTGTAGTATGTATGAATTGGCATTTGTGAGCAATGTTGAGACCAAGAGATCTCTCAGTTCTTGGATTGTGCAAATTGCACCAGAAGATTTTGATTTGTCCTGTACCCGG

Fln Alignment:

GG46A6U02H3YU0___NLLGSIKVLENSLEIVPVIALNENVVLNLCSMYELAFVSNVETKRSLSSWIVQIAPEDFDLSCTR
I3S8V2_______________DLSDSIKVLENALERVPTVALNETIVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDSTCTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain