SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71702

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene71702
CGTCGTGACCTTGGCTGTCACTCAATCCTTGACTCGGGAGACAGGACCTCAGATCATTCATGGAGATCCAGAAAAAGCAAGGGGGCAGCCTCTGGAGTCCTTAATTTCAACTCCACCTAGTCCTAGCATCAGTGACAGCTCTCTCAAGCTTACTCATGTTTTGTATAATCTTTCTCCTCCAGAACTTTATGAACAAGCTC

Ace file of the UniGene sp_v3.0_unigene71702

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Phosphoenolpyruvate carboxykinase [ATP]; Cucumis sativus (Cucumber).	-	-	0.0	54%
Sma3	Phosphoenolpyruvate carboxykinase [ATP], putative	-	-	1.348e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoenolpyruvate carboxykinase (ATP).	EC:4.1.1.49	-	6.874e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	6.874e-08	%
Sma3	Citrate cycle (TCA cycle)	00020	6.874e-08	%
Sma3	Pyruvate metabolism	00620	6.874e-08	%
Sma3	Carbon fixation in photosynthetic organisms	00710	6.874e-08	%
Sma3	Metabolic pathways	01100	6.874e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	6.874e-08	%

Source	Gene names
Sma3	PHYPADRAFT_111128; PHYPADRAFT_136941; POPTRDRAFT_719763; RCOM_0188120; RCOM_1584090;

Source	GOs	Term	Type	Identity
Sma3	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P42066

Fln msg: Distance to subject end: 507 aas, your sequence is shorter than subject: 66 - 670

Fln protein: VVTLAVTQSLTRETGPQIIHGDPEKARGQPLESLISTPPSPSISDSSLKLTHVLYNLSPPELYEQA

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTTGACTCGGGAGACAGGACCTCAGATCATTCATGGAGATCCAGAAAAAGCAAGGGGGCAGCCTCTGGAGTCCTTAATTTCAACTCCACCTAGTCCTAGCATCAGTGACAGCTCTCTCAAGCTTACTCATGTTTTGTATAATCTTTCTCCTCCAGAACTTTATGAACAAGCTC

Fln Alignment:

GG46A6U02JBCDH___SLTRETGPQIIHGDPEKA----RGQXXXXXXXXXXXXXXXXXXXXXTHVLYNLSPPELYEQA
P42066_______________SLTRETGPKLVKGDPEKKKEAHKASVLDHLHFGEPILNLSDSALKSTHILYNPSPAELYEQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain