SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71612

Length: 170 nt

UniGene Fasta

>sp_v3.0_unigene71612
CGTCGTGACCTTGGCTGTCACTCATGTGTACATGGCAGCGGTTTTGGAGTATCTGACTGCAGAGGTAATCGAATTAGCGGGGAATGGTAGCAAAGAACTGAAGGCCAAACGCATTACACCCAGGCATCTGCAGCTTGCCATTAGGGCTGATGAGGATCTGGACACGCTGA

Ace file of the UniGene sp_v3.0_unigene71612

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=2 Tax=Chlamydomonadales RepID=A8HRZ9_CHLRE	-	-	4.0e-15	78%
FL-Next	sp=Histone H2A; Pinus pinaster (Maritime pine).	-	-	0.0	78%
Sma3	Histone H2A	-	-	0.0	-

Source	Gene names
Sma3	At1g51060; At1g52740; At2g38810; At3g20670; At3g54560; At4g13570; At4g27230; At5g02560; At5g27670; At5g54640; At5g59870; CHLREDRAFT_100147; CHLREDRAFT_100223; CHLREDRAFT_107113; CHLREDRAFT_109409; CHLREDRAFT_112398; CHLREDRAFT_112753; CHLREDRAFT_115469; C

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	BSD	IPR005607	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54560.1	HTA11 histone H2A 11 chr3:20196532-20197466 FORWARD LENGTH=136	2.0e-21	76%
RefSeq	Arabidopsis thaliana	NP_191019.1	histone H2A [Arabidopsis thaliana]	3.0e-21	76%
RefSeq	Populus trichocarpa	XP_002309601.1	histone 2 [Populus trichocarpa]	8.0e-22	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q84L44

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 56 - 139

Fln protein: VVTLAVTHVYMAAVLEYLTAEVIELAGNGSKELKAKRITPRHLQLAIRADEDLDTL

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTACATGGCAGCGGTTTTGGAGTATCTGACTGCAGAGGTAATCGAATTAGCGGGGAATGGTAGCAAAGAACTGAAGGCCAAACGCATTACACCCAGGCATCTGCAGCTTGCCATTAGGGCTGATGAGGATCTGGACACGCTGA

Fln Alignment:

GG46A6U02JV6DI___AVTHVYMAAVLEYLTAEVIELAGNGSKELKAKRITPRHLQLAIRADEDLDTL
Q84L44_______________ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain