SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71530

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene71530
CGTCGTGACCTTGGCTGTCACTCAATACCAGTTCAATCACATCAACTTGGCTGGGCATACCTCTTAAGCCATAAAAAATATCTGTCTGCAGTCGTGGAAGAGCAGAAAGATGTGAAGAAGCGCCATGGAGACAAACTAGACCATGATGTGCTGGCTGAGATGGATGTTC

Ace file of the UniGene sp_v3.0_unigene71530

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Obtusifoliol 14-alpha demethylase n=9 Tax=Poaceae RepID=CP51_SORBI	-	-	6.0e-09	59%
FL-Next	sp=Obtusifoliol 14-alpha demethylase; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	59%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11680.1	CYP51G1, EMB1738, CYP51A2, CYP51 CYTOCHROME P450 51G1 chr1:3938925-3940585 FORWARD LENGTH=488	5.0e-11	50%
RefSeq	Arabidopsis thaliana	NP_172633.1	cytochrome P450, family 51 (sterol 14-demethylase) [Arabidopsis thaliana]	7.0e-11	50%
RefSeq	Populus trichocarpa	XP_002299356.1	cytochrome P450 obtusifoliol 14-alpha-demethylase [Populus trichocarpa]	4.0e-13	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93846

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 56 - 492

Fln protein: RRDLGCHSIPVQSHQLGWAYLLSHKKYLSAVVEEQKDVKKRHGDKLDHDVLAEMDV

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACCAGTTCAATCACATCAACTTGGCTGGGCATACCTCTTAAGCCATAAAAAATATCTGTCTGCAGTCGTGGAAGAGCAGAAAGATGTGAAGAAGCGCCATGGAGACAAACTAGACCATGATGTGCTGGCTGAGATGGATGTTC

Fln Alignment:

GG46A6U02FGQE1___GCHSIPVQSHQLGWAYLLSHKKYLSAVVEEQKDVKKRHGDKLDHDVLAEMDV
P93846_______________GQHTSSITSTWTG-AYMLRFKQYFAEAVEEQKDVMKRHGDKIDHDILAEMDV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain