SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71523

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene71523
GAATTATGGAAGAATATCAGCTTAACATCTCCAAACAGTTTAGGGTACAGGCAGATTTTCAACTGATGCTAGAGAGCATAAGTACAAGATTATTAAACGATTGCATGCTAGAAAGCACATATGTGGAATGACCGACGATAGTGTTAATGATGCGCCTGCGCTAAAGAAGGCAAACATAGAAATTATTGTTGTTCATGACAAATGATG

Ace file of the UniGene sp_v3.0_unigene71523

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	H+-transporting ATPase-like protein [Arabidopsis thaliana]	-	-	2.0e-10	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Plasma membrane H+-ATPase	-	-	8.5e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 3.6.3.6.	EC:3.6.1.35	-	9.869e-06	-
Sma3	Proton-exporting ATPase.	EC:3.6.3.6	-	2.141e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		2.141e-12	%

Source	Gene names
Sma3	AHA1; AHA11; AHA2; AHA3; AHA4; AHA5; AHA6; AHA7; AHA8; AHA9; AT4G30190; ATP1; Aa_42640; At1g80660; At2g07560; At2g24520; At3g42640; At3g47950; At3g60330; At4g30190; At5g57350; At5g62670; BHA-1; Cr_42640; DcPA 1; DcPA 2; DcPA 3; DcPA 4; DcPA 5; DcPA 6; F23

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62670.1	AHA11, HA11 H(+)-ATPase 11 chr5:25159495-25164957 FORWARD LENGTH=956	4.0e-14	79%
RefSeq	Arabidopsis thaliana	NP_201073.1	H(+)-ATPase 11 [Arabidopsis thaliana]	5.0e-14	79%
RefSeq	Populus trichocarpa	XP_002318614.1	autoinhibited H+ ATPase, partial [Populus trichocarpa]	5.0e-14	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 337 aas, your sequence is shorter than subject: 68 - 955

Fln protein: NYGRISA*HLQTV*GTGRFSTDAREHKYKIIKRLHARKHICGMTDDSVNDAPALKKANIEIIVVHDK*

Protein Length: 69

Fln nts: GAATTATGGAAGAATATCAGCTTAACATCTCCAAACAGTTTAGGGTACAGGCAGATTTTCAACTGATGCTAGAGAGCATAAGTACAAGATTATTAAACGATTGCATGCTAGAAAGCACATATGTGGAATGACCGACGATAGTGTTAATGATGCGCCTGCGCTAAAGAAGGCAAACATAGAAATTATTGTTGTTCATGACAAATGATG

Fln Alignment:

GG46A6U02GMXLO___EHKYKIIKRLHARKHICGMTDDSVNDAPALKKANIEIIV
B8LQS1_______________EHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain