SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71514

Length: 244 nt

UniGene Fasta

>sp_v3.0_unigene71514
CGTCGTGACCTTGGCTGTCACATTCTTGTTTTACTTTCTACGCTGATCAATTCTGGCCCAACGGACGTCCTGGTATACCAAAACTTATACATAGATGGCTGTCACCTTGTGTTCTTGCTTATTGGTATATGTATGGCGGTTACAGAACATCTTCTGGTGATATTCTATTGAGAGTAAAGGGAAGTCGAGAGGAAGTTGCGAATATTGTTAAAGTGCTGAAAGCCAAATCATTAGACAGCAGAGT

Ace file of the UniGene sp_v3.0_unigene71514

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9XIL5.3\|PP154_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15820 pir\|\|G84533 hypothetical protein At2g15820 [imported] - Arabidopsis thaliana gb\|AEC06439.1\| pent	-	-	3.0e-23	66%
FL-Next	sp=Pentatricopeptide repeat-containing protein At2g15820; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%

Source	Gene names
Sma3	At2g15820; F19G14.18; GSVIVT00036547001; POPTRDRAFT_201586; RCOM_0774040;

Source	GOs	Term	Type	Identity
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3		GO:0031202	Molecular Function	-
Sma3	Group II intron splicing	GO:0000373	Biological Process	-
Sma3	photosystem I assembly	GO:0048564	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	LAGLIDADG DNA endonuclease	IPR004860	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G15820.1	OTP51 endonucleases chr2:6888734-6891360 REVERSE LENGTH=849	5.0e-29	66%
RefSeq	Arabidopsis thaliana	NP_565382.4	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-29	66%
RefSeq	Populus trichocarpa	XP_002313087.1	predicted protein, partial [Populus trichocarpa]	2.0e-35	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XIL5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 73 aas, your sequence is shorter than subject: 80 - 849

Fln protein: S*PWLSHSCFTFYADQFWPNGRPGIPKLIHRWLSPCVLAYWYMYGGYRTSSGDILLRVKGSREEVANIVKVLKAKSLDSR

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACATTCTTGTTTTACTTTCTACGCTGATCAATTCTGGCCCAACGGACGTCCTGGTATACCAAAACTTATACATAGATGGCTGTCACCTTGTGTTCTTGCTTATTGGTATATGTATGGCGGTTACAGAACATCTTCTGGTGATATTCTATTGAGAGTAAAGGGAAGTCGAGAGGAAGTTGCGAATATTGTTAAAGTGCTGAAAGCCAAATCATTAGACAGCAGAGT

Fln Alignment:

GG46A6U02GM8O8___HSCFTFYADQFWPNGRPGIPKLIHRWLSPCVLAYWYMYGGYRTSSGDILLRVKGSREEVANIVKVLKAKSLDSR
Q9XIL5_______________HSYFGFYAEHYWPKGQPEIPKLIHRWLSPHSLAYWYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain