SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71505

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene71505
AAGTCTATTCAACAACTGAGATCTATTGGCGGAAGCGGAGTCTTGGTGTCGAAACTGACCTACATATTTGACGAGGAGACTCCTAGGTGGCGCAAACTTCTGTCGGAGCTGGGAATGTGAGACTTGCCTCCAAGGTCGGCCATGCTCTCCTCTAGAATGGACCGTCTCAGTGAGCATCTGAACTTATGCTCGCTGTATTGTGTACATCATACACAGGAGCGACCCGAGT

Ace file of the UniGene sp_v3.0_unigene71505

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP phosphoribosyltransferase [Oryza sativa Indica Group]	-	-	2.0e-13	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Chloroplast ATP phosphoribosyl transferase	-	-	5.599e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	ATP phosphoribosyltransferase.	EC:2.4.2.17	-	2.865e-20	-

Source	KEGGs	Term	e value	Identity
Sma3	Histidine metabolism	00340	2.865e-20	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	2.865e-20	%
Sma3	Biosynthesis of plant hormones	01070	2.865e-20	%
Sma3	Metabolic pathways	01100	2.865e-20	%
Sma3	Biosynthesis of secondary metabolites	01110	2.865e-20	%

Source	Gene names
Sma3	ATP-PRT1; ATP-PRT2; At1g09795; At1g09795/F21M12.39; At1g58080; AtATP-PRT1; AtATP-PRT2; GSVIVT00035413001; LOC_Os03g04169; OJ1006F06.12; Os03g0134300; OsI_09882; OsJ_09307; PHYPADRAFT_64865; POPTRDRAFT_923360; RCOM_2110740; T15M6.9; THG1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	ATP phosphoribosyltransferase activity	GO:0003879	Molecular Function	-
Sma3	histidine biosynthetic process	GO:0000105	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATP phosphoribosyltransferase HisG	IPR001348	-	-
Sma3	Histidine biosynthesis HisG, C-terminal	IPR013115	-	-
Sma3	ATP phosphoribosyltransferase, catalytic domain	IPR013820	-	-
Sma3	ATP phosphoribosyltransferase, conserved site	IPR018198	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09795.1	ATATP-PRT2, HISN1B, ATP-PRT2 ATP phosphoribosyl transferase 2 chr1:3173588-3176690 FORWARD LENGTH=413	6.0e-13	71%
RefSeq	Arabidopsis thaliana	NP_563853.1	ATP phosphoribosyltransferase [Arabidopsis thaliana]	8.0e-13	71%
RefSeq	Populus trichocarpa	XP_002328700.1	predicted protein [Populus trichocarpa]	5.0e-13	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY9

Fln msg: your sequence is shorter than subject: 40 - 413

Fln protein: KSIQQLRSIGGSGVLVSKLTYIFDEETPRWRKLLSELGM*

Protein Length: 41

Fln nts: AAGTCTATTCAACAACTGAGATCTATTGGCGGAAGCGGAGTCTTGGTGTCGAAACTGACCTACATATTTGACGAGGAGACTCCTAGGTGGCGCAAACTTCTGTCGGAGCTGGGAATGTGA___GACTTGCCTCCAAGGTCGGCCATGCTCTCCTCTAGAATGGACCGTCTCAGTGAGCATCTGAACTTATGCTCGCTGTATTGTGTACATCATACACAGGAGCGACCCGAGT

Fln Alignment:

GG46A6U02FJJX1___SIQQLRSIGGSGVLVSKLTYIFDEETPRWRKLLSELGM
B8LKY9_______________SVCQLRKIGGSGVLVSPLTYIFDEEPPRWRKLLDQLNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain