SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71492

Length: 135 nt

UniGene Fasta

>sp_v3.0_unigene71492
CGTCGTGACCTTGGCTGTCACTCAGTATTTTACAACATGATACACTAGTGATGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATTAATCGCTGAGAGAAATAATGTCAGTTGTGGATAC

Ace file of the UniGene sp_v3.0_unigene71492

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L4/L1 family protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQM8_ORYSJ	-	-	9.0e-07	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	LOC_Os12g30490; Os12g0488600; OsI_38360; OsJ_36122;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L4/L1e	IPR002136	-	-
Sma3	Ribosomal protein L4/L1e, bacterial-type	IPR013005	-	-
Sma3		IPR015498	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 36 - 323

Fln protein: S*PWLSLSILQHDTLVMTVDAVNRIVERMHTPINR*

Protein Length: 37

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTTACAACATGATACACTAGTGATGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATTAATCGCTGA___GAGAAATAATGTCAGTTGTGGATAC

Fln Alignment:

GG46A6U02F5FMY___SILQHDTLVMTVDAVNRIVERMHTPINR
D5ABZ3_______________SILQHDTLVMTADAVNRIVERMHTPINR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain