SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71474

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene71474
CGTCGTGACCTTGGCTGTCACTCATCGTTGGAAGGAGGTTCGACATGTCTCATGAGAATGAAAGAAGTGAAGAAGCTGCGGGGGATGGTAGATGAAGGGTTCCAACTCTTAGGAGCGTTCAACTGGGCGGATCATCTCCCATGGTTGCGCCCGCTGGACCCTCTTCGAATCCATGCTCGCTGCGCCCGCCTCGTGCCGCGTGTGACA

Ace file of the UniGene sp_v3.0_unigene71474

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA	-	-	3.0e-23	95%
FL-Next	sp=Cytochrome P450 78A4; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	95%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	7.264e-08	-

Source	Gene names
Sma3	CYP78; CYP78A1; CYP78A11; CYP78A18; CYP78A4; GSVIVT00019397001; LOC_Os10g26340; OSJNBa0044A10.17; Os10g0403000; OsI_33499; OsI_34386; PHYPADRAFT_167047; PLA1; POPTRDRAFT_694349; PRE74; RCOM_0209990;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61880.2	CYP78A9 cytochrome p450 78a9 chr3:22905979-22907890 REVERSE LENGTH=555	8.0e-15	58%
RefSeq	Arabidopsis thaliana	NP_191747.1	cytochrome p450 78a9 [Arabidopsis thaliana]	1.0e-14	58%
RefSeq	Populus trichocarpa	XP_002307129.1	cytochrome P450 [Populus trichocarpa]	7.0e-15	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O65012

Fln msg: Distance to subject end: 260 aas, your sequence is shorter than subject: 69 - 553

Fln protein: RRDLGCHSSLEGGSTCLMRMKEVKKLRGMVDEGFQLLGAFNWADHLPWLRPLDPLRIHARCARLVPRVT

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTGGAAGGAGGTTCGACATGTCTCATGAGAATGAAAGAAGTGAAGAAGCTGCGGGGGATGGTAGATGAAGGGTTCCAACTCTTAGGAGCGTTCAACTGGGCGGATCATCTCCCATGGTTGCGCCCGCTGGACCCTCTTCGAATCCATGCTCGCTGCGCCCGCCTCGTGCCGCGTGTGACA

Fln Alignment:

GG46A6U02H3HNY___KEVKKLRGMVDEGFQLLGAFNWADHLPWLRPLDPLRIHARCARLVPRVT
O65012_______________EEVKKLREMVDEGFQLLGAFNWADHLPWLRPLDPLRIHARCARLVPRVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain