SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71446

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene71446
CGTCGTGACCTTGGCTGTCACTCAGTCTTCTCTTCCATGACTGCCAAGTGCAGGGTTGTGATGCATCCATATTACTGGGTTCTGGAGGACCCATTTCATCGGAGCTGATTTCCGAAAAAAACTTTGGAATCCGAAAACTCAACGCAATCGACAGAATAAAGTCTGCTGTTGAAGCAGCATGCCCAGGCACAGTATCATGCGCCGACATTATGCATTAGCGGCTCG

Ace file of the UniGene sp_v3.0_unigene71446

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase 1 [Marchantia polymorpha]	-	-	4.0e-10	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Peroxidase	-	-	2.335e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	6.635e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	6.635e-15	%
Sma3	Methane metabolism	00680	6.635e-15	%
Sma3	Phenylpropanoid biosynthesis	00940	6.635e-15	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.635e-15	%
Sma3	Metabolic pathways	01100	6.635e-15	%
Sma3	Biosynthesis of secondary metabolites	01110	6.635e-15	%

Source	Gene names
Sma3	FBP1; GSVIVT00033150001; GSVIVT00036874001; MpPOD1; OJ1077_A12.23; OSJNBa0042F15.11; OSJNBa0065J17.14; Os01g0263000; Os01g0263300; Os01g0543100; Os02g0236600; Os05g0134800; Os05g0231900; OsI_01276; OsI_01277; OsI_01504; OsI_02330; OsI_06495; OsI_18350; Os

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03670.1	Peroxidase superfamily protein chr3:901985-903349 REVERSE LENGTH=321	8.0e-12	53%
RefSeq	Arabidopsis thaliana	NP_187017.1	peroxidase [Arabidopsis thaliana]	1.0e-11	53%
RefSeq	Populus trichocarpa	XP_002331521.1	predicted protein [Populus trichocarpa]	1.0e-14	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNP1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 202 aas, your sequence is shorter than subject: 72 - 342

Fln protein: S*PWLSLSLLFHDCQVQGCDASILLGSGGPISSELISEKNFGIRKLNAIDRIKSAVEAACPGTVSCADIMH*

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTTCTCTTCCATGACTGCCAAGTGCAGGGTTGTGATGCATCCATATTACTGGGTTCTGGAGGACCCATTTCATCGGAGCTGATTTCCGAAAAAAACTTTGGAATCCGAAAACTCAACGCAATCGACAGAATAAAGTCTGCTGTTGAAGCAGCATGCCCAGGCACAGTATCATGCGCCGACATTATGCATTAGCGGCTCG

Fln Alignment:

GG46A6U02HZ9IS___LFHDCQVQGCDAXXXXXXXXXXXXXXXXXKNFGIRKLNAIDRIKSAVEAACPGTVSCADIM
A9NNP1_______________IFHDCAVESCDASLLLDSTRKSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain