SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71412

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene71412
CGTCGTGACCTTGGCTGTCACTCAGGTCTCTTGGGAAAATATTATTAAAAGGAAGGAGGAAGGAGGTTTGGGAGTAAGGGACCCGGAGATCTTGAATAAGGTTCTAGGAGCGAAGCTATGGTGGAGATGGATCCAGGGAGGAAACGATGTATGGAAGAAAATATGGAATCAAAAATATGACATGCCAGGAACAATTGAAGGGCGCTTGAGAGCTGAAG

Ace file of the UniGene sp_v3.0_unigene71412

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O82276_ARATH	-	-	2.0e-05	40%
FL-Next	sp=Putative ribonuclease H protein At1g65750; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P0C2F6

Fln msg: Distance to subject end: 470 aas, your sequence is shorter than subject: 72 - 620

Fln protein: VVTLAVTQVSWENIIKRKEEGGLGVRDPEILNKVLGAKLWWRWIQGGNDVWKKIWNQKYDMPGTIEGRLRAE

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTCTTGGGAAAATATTATTAAAAGGAAGGAGGAAGGAGGTTTGGGAGTAAGGGACCCGGAGATCTTGAATAAGGTTCTAGGAGCGAAGCTATGGTGGAGATGGATCCAGGGAGGAAACGATGTATGGAAGAAAATATGGAATCAAAAATATGACATGCCAGGAACAATTGAAGGGCGCTTGAGAGCTGAAG

Fln Alignment:

GG46A6U02JV0LS___VSWENIIKRKEEGGLGVRDPEILNKVLGAKLWWRWIQGGNDVWKKIWNQKY
P0C2F6_______________VKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain