SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71393

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene71393
CGTCGTGACCTTGGCTGTCACTCATTTTGGGTTTTAATGGCTTTCTGCCTAAAGGTTATGAAATTACATTTCCTTTCCCGCAAAAACAGTTTGACTTTAGCCCTGCAATCAGTTATGTTAATAAGATCAAGACAAGGTTTCAAAGTGATGAACAAGTATATC

Ace file of the UniGene sp_v3.0_unigene71393

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Paired amphipathic helix repeat-containing protein / transcription regulator-related n=1 Tax=Musa acuminata RepID=Q1EPA1_MUSAC	-	-	2.0e-09	65%
FL-Next	sp=Paired amphipathic helix protein Sin3-like 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	Putative histone deacetylase complex, SIN3 component	-	-	3.215e-09	-

Source	Gene names
Sma3	MA4_54N07.42; MBP_91N22.72; Os01g0109700; OsJ_00078; PHYPADRAFT_187128; PHYPADRAFT_40393; POPTRDRAFT_804951; RCOM_0699610; SNT1503; SNT1506; SNT902;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Paired amphipathic helix	IPR003822	-	0.0	-
Sma3	Histone deacetylase interacting	IPR013194	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G70060.1	SNL4 SIN3-like 4 chr1:26383789-26389568 FORWARD LENGTH=1326	1.0e-12	59%
RefSeq	Arabidopsis thaliana	NP_177163.3	paired amphipathic helix protein Sin3-like 4 [Arabidopsis thaliana]	1.0e-12	59%
RefSeq	Populus trichocarpa	XP_002314629.1	SIN3 component, histone deacetylase complex [Populus trichocarpa]	2.0e-13	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04539

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1206 aas, your sequence is shorter than subject: 53 - 1326

Fln protein: S*PWLSLILGFNGFLPKGYEITFPFPQKQFDFSPAISYVNKIKTRFQSDEQVY

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGGTTTTAATGGCTTTCTGCCTAAAGGTTATGAAATTACATTTCCTTTCCCGCAAAAACAGTTTGACTTTAGCCCTGCAATCAGTTATGTTAATAAGATCAAGACAAGGTTTCAAAGTGATGAACAAGTATATC

Fln Alignment:

GG46A6U02HAIPC___LILGFNGFLPKGYEITF-------PFPQKQFDFSPAISYVNKIKTRFQSDEQVY
O04539_______________LILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain