SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71392

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene71392
CGTCGTGACCTTGGCTGTCACTCATTTTGGCAAGGTTTACAGGGGCGTTCTCCCCACCAGCGGCCAAGAAGTAGCAGTCAAATGCATAATGAAGGAGTTCACGGAGGGAATGAAAGGGTTTGTCGCAGAGATCTCGAGCATGGGACGCCTAGAGCACCGGAACCTGGTTCATCTCCGGGGCTGGTGCCGGAGGCAGAAACAATTATTCATCGTTTACGACTACATGCCCAACGGCAGCCTGGATAATCTCATATTTGGGAACCCAACGACAGTCCTTCCGTGGGATCGGCGATTACGCGATCCTGAAGGGCGTGGCGGCGGGGCTGCTGTATCTG

Ace file of the UniGene sp_v3.0_unigene71392

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	concanavalin A-like lectin protein kinase-like protein [Arabidopsis thaliana] sp\|Q9M9E0.1\|LRKS1_ARATH RecName: Full=L-type lectin-domain containing receptor kinase S.1; Short=LecRK-S.1; Flags: Precursor gb\|AAF71991.1\|AC013453_16 Putative serine/threonine-	-	-	2.0e-26	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Putative receptor-type protein kinase LRK1	-	-	7.962e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	6.827e-13	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; AT4g04960; At1g15530; At2g37710; At3g08870; At3g45410; At3g45430; At3g45440; At3g53810; At4g02410; At4g02420; At4g04960; At5g59260; At5g60270; At5g60280; At5g60300; At5g60320; B1008E06.18; F18N11.170; F5K20_110; F9K21.10; F9K21.20; G

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	focal adhesion assembly	GO:0048041	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15530.1	Concanavalin A-like lectin protein kinase family protein chr1:5339961-5341931 REVERSE LENGTH=656	1.0e-32	59%
RefSeq	Arabidopsis thaliana	NP_173006.1	concanavalin A-like lectin protein kinase-like protein [Arabidopsis thaliana]	2.0e-32	59%
RefSeq	Populus trichocarpa	XP_002315211.1	predicted protein [Populus trichocarpa]	1.0e-32	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRD0

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 111 - 343

Fln protein: VVTLAVTHFGKVYRGVLPTSGQEVAVKCIMKEFTEGMKGFVAEISSMGRLEHRNLVHLRGWCRRQKQLFIVYDYMPNGSLDNLIFGNPTTVLPWDRRLRDPEGRGGGAAVS

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGCAAGGTTTACAGGGGCGTTCTCCCCACCAGCGGCCAAGAAGTAGCAGTCAAATGCATAATGAAGGAGTTCACGGAGGGAATGAAAGGGTTTGTCGCAGAGATCTCGAGCATGGGACGCCTAGAGCACCGGAACCTGGTTCATCTCCGGGGCTGGTGCCGGAGGCAGAAACAATTATTCATCGTTTACGACTACATGCCCAACGGCAGCCTGGATAATCTCATATTTGGGAACCCAACGACAGTCCTTCCGTGGGATCGGCGATTACGCGATCCTGAAGGGCGTGGCGGCGGGGCTGCTGTATCTG

Fln Alignment:

GG46A6U02I42GO___FGKVYRGVLPTSGQEVAVKCIMKEFTEGMKGFVAEISSMGRLEHRNLVHLRGWCRRQKQLFIVYDYMPNGSLDNLIFGNPTTVLPWDRRLRDPEGRGGGAA
C0PRD0_______________FGKVYRGVLPGGGQEVAVKCITKDFTEGMKGFVAEISTMGRMQHRNLVQLRGWCRRQKQLFIVYDHMPNCSLDKLIFGNPTTVLPWARRYVILKGVAAGAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain