SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71371

Length: 164 nt

UniGene Fasta

>sp_v3.0_unigene71371
CGTCGTGACCTTGGCTGTCACTCAACATTGTTGGTGCTGCTGCTGCTGCCTGTTCTTTGCGATTTATCTCTGTGAAAGGACCTGAGCTGCTAAACAAATATATTGGAGCATTAGAACAAGCTGTCCGAGATATATTCTCTAAAGCATCTGCAGCGGCTCCATGC

Ace file of the UniGene sp_v3.0_unigene71371

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxisome biogenesis protein PEX1 [Arabidopsis thaliana]	-	-	1.0e-16	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	GSVIVT00035546001; OJ1150_A11.13; Os08g0556500; OsI_30227; OsJ_28250; PEX1; PHYPADRAFT_95675; POPTRDRAFT_180876; RCOM_0897760;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	fatty acid beta-oxidation	GO:0006635	Biological Process	-
Sma3	peroxisome organization	GO:0007031	Biological Process	-
Sma3	protein import into peroxisome matrix	GO:0016558	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08470.1	PEX1 peroxisome 1 chr5:2735925-2742731 FORWARD LENGTH=1130	1.0e-21	93%
RefSeq	Arabidopsis thaliana	NP_196464.2	peroxisome 1 [Arabidopsis thaliana]	1.0e-21	93%
RefSeq	Populus trichocarpa	XP_002298113.1	predicted protein, partial [Populus trichocarpa]	5.0e-23	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACE6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 176 aas, your sequence is shorter than subject: 54 - 442

Fln protein: S*PWLSLNIVGAAAAACSLRFISVKGPELLNKYIGALEQAVRDIFSKASAAAPC

Protein Length: 55

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTGTTGGTGCTGCTGCTGCTGCCTGTTCTTTGCGATTTATCTCTGTGAAAGGACCTGAGCTGCTAAACAAATATATTGGAGCATTAGAACAAGCTGTCCGAGATATATTCTCTAAAGCATCTGCAGCGGCTCCATGC

Fln Alignment:

GG46A6U02J5LLB___AAAAACSLRFISVKGPELLNKYIGALEQAVRDIFSKASAAAP
D5ACE6_______________AVASEAGLNFLAVKGPELFSKWVGESEKAIQSLFAKARAAAP

SSRs (tot: 1)

Start position	End position	Sequence	Length
35	49	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain