SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71345

Length: 272 nt

UniGene Fasta

>sp_v3.0_unigene71345
CGTCGTGACCTTGGCTGTCACTCATGTTAGAGCAGAAAACTGACTTGGTATATATTGCTGGTGTCGACATTTCACAGCGAAGTCTTATTCGTGCTGCTAAGGTTCTTCATTCAAAACTTGATGTGGGTCATAAGCCTCGATTAGCCACGCCCAGCTTCGAAAGTGCCTTTATATATGAAGGGTCCATCACTGAATTTGATCAGCGGATTCATGGATTTGATGTTGCAACATGCATCGAGGTGATTGAACATATGGAAGAAGACCAAGCATAC

Ace file of the UniGene sp_v3.0_unigene71345

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] ref\|NP_001190782.1\| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] sp\|Q9C5Q8.1\|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName: Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA	-	-	7.0e-15	51%
FL-Next	sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	cDNA clone:J013102N10, full insert sequence	-	-	6.823e-06	-

Source	Gene names
Sma3	GSVIVT00029765001; Os07g0164000; OsI_25006; OsJ_23196;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Methyltransferase type 12	IPR013217	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G20910.1	HEN1, CRM2 double-stranded RNA binding protein-related / DsRBD protein-related chr4:11186264-11190575 REVERSE LENGTH=942	4.0e-19	51%
RefSeq	Arabidopsis thaliana	NP_001190782.1	RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana]	5.0e-19	51%
RefSeq	Populus trichocarpa	XP_002330552.1	hypothetical protein POPTRDRAFT_270173, partial [Populus trichocarpa]	5.0e-13	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5Q8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 135 aas, your sequence is shorter than subject: 90 - 942

Fln protein: S*PWLSLMLEQKTDLVYIAGVDISQRSLIRAAKVLHSKLDVGHKPRLATPSFESAFIYEGSITEFDQRIHGFDVATCIEVIEHMEEDQAY

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTAGAGCAGAAAACTGACTTGGTATATATTGCTGGTGTCGACATTTCACAGCGAAGTCTTATTCGTGCTGCTAAGGTTCTTCATTCAAAACTTGATGTGGGTCATAAGCCTCGATTAGCCACGCCCAGCTTCGAAAGTGCCTTTATATATGAAGGGTCCATCACTGAATTTGATCAGCGGATTCATGGATTTGATGTTGCAACATGCATCGAGGTGATTGAACATATGGAAGAAGACCAAGCATAC

Fln Alignment:

GG46A6U02IKQDF___LSLMLEQKTDLVYIAGVDISQRSLIRAAKVLHSKLDVGHKPRLATPSFESAFIYEGSITEFDQRIHGFDVATCIEVIEHMEEDQA
Q9C5Q8_______________LDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK------EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain