SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71301

Length: 321 nt

UniGene Fasta

>sp_v3.0_unigene71301
CGTCGTGACCTTGGCTGTCACTCAGATTTTGATGATTTGCGCGATCTCTATGAGGACGGGAACAGCTCAAGTGGAGGTTTGGATGTAGCATCACAGATTCCTCTGGATGATGGCGTTCCACCTGTTGATTATGTTATTGTGGAGGTTGTACAATGTTTAATTGAACGCCACAATGCAGTTTTCACAGATGCAAGTGAAACTGTGTGGCACTAATAGCTTTCCTTGTCTTGATCTGACAATTTGGATAAATCTGTTTCAAATTCCTGTTCCTTATCGTAACATTTGGTCTTGTATTTAACAAGGATCCGCTATTTATTGTGA

Ace file of the UniGene sp_v3.0_unigene71301

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rho GTPase activator, putative n=1 Tax=Ricinus communis RepID=B9R9W7_RICCO	-	-	1.0e-05	56%
FL-Next	Isoform 2 of Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530	-	-	0.0	68%

Source	Gene names
Sma3	At5g61530; K11J9.10; Os07g0486500; OsI_26031; OsJ_24279; P0683C09.118; RCOM_1501010;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	GTPase activator activity	GO:0005096	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rho GTPase-activating protein domain	IPR000198	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q3E875-2

Fln msg: your sequence is shorter than subject: 71 - 367

Fln protein: RRDLGCHSDFDDLRDLYEDGNSSSGGLDVASQIPLDDGVPPVDYVIVEVVQCLIERHNAVFTDASETVWH*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTTGATGATTTGCGCGATCTCTATGAGGACGGGAACAGCTCAAGTGGAGGTTTGGATGTAGCATCACAGATTCCTCTGGATGATGGCGTTCCACCTGTTGATTATGTTATTGTGGAGGTTGTACAATGTTTAATTGAACGCCACAATGCAGTTTTCACAGATGCAAGTGAAACTGTGTGGCACTAA___TAGCTTTCCTTGTCTTGATCTGACAATTTGGATAAATCTGTTTCAAATTCCTGTTCCTTATCGTAACATTTGGTCTTGTATTTAACAAGGATCCGCTATTTATTGTGA

Fln Alignment:

GG46A6U02FXFHB___GLDVASQIPLDDGXXXXXXXXXXXXQCLIERHNAVFTDASETVW
Q3E875-2_____________GPDASSSIPLDD-IARVDFGAVEVVQCLIEHHNAIFTDAAETVW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain