SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71224

Length: 390 nt

UniGene Fasta

>sp_v3.0_unigene71224
CGTCGTGACCTTGGCTGTCAACTGTGTTTGTCAGAGGAATAATGTCTATTCCAACAACATTGCAAGGCCCATTTAAGCCTGTGACTGTGTCCCTCGATCCCACTCTGCGCAATGGAAGCGATGACTTGCCCAACTACGACCCTCGCCTCGTCAAGAGAGTTCCTTCTATCTTCCCAGAGCAAATAATGCTTGCGCTTTCAACTACCCCTAACTCCATGTGGGTTTCTTGGGTAACAGGTGATGCTCAGATCGGACCCAAGGTAACGCCATTGGATCCCTCCTCAGTGAGGAGTGAAGTGTATTACAGCACTAAAAGTGGCGTACACTCCCTTAAAGCTGAAGGGACATCTGTGATCTATAGCCAAACATATACAAACAAGGGCCTTTCGC

Ace file of the UniGene sp_v3.0_unigene71224

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purple acid phosphatase 23 [Arabidopsis thaliana] gb\|AAQ93685.1\| putative purple acid phosphatase [Arabidopsis thaliana] gb\|AEE83314.1\| purple acid phosphatase 23 [Arabidopsis thaliana]	-	-	3.0e-31	61%
FL-Next	sp=Purple acid phosphatase 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Phytase	-	-	1.229e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	2.396e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		2.396e-17	%
Sma3	Riboflavin metabolism	00740		2.396e-17	%

Source	Gene names
Sma3	AT1; AT3; At3g07130; At4g13700; F18A5.90; GSVIVT00010413001; GSVIVT00011763001; GSVIVT00020463001; GSVIVT00031672001; LOC_Os03g63074; OSJNBb0043P23.2; OSJNBb0096M04.130; Os08g0280100; OsI_14321; OsI_28583; OsJ_26722; P0026A08.24; PAP; PAP15; PAP23; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13700.1	ATPAP23, PAP23 purple acid phosphatase 23 chr4:7957072-7958919 REVERSE LENGTH=458	1.0e-38	61%
RefSeq	Arabidopsis thaliana	NP_193106.3	purple acid phosphatase 23 [Arabidopsis thaliana]	2.0e-38	61%
RefSeq	Populus trichocarpa	XP_002303814.1	predicted protein, partial [Populus trichocarpa]	1.0e-39	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q6TPH1

Fln msg: Distance to subject end: 323 aas, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 116 - 458

Fln protein: MSIPTTLQGPFKPVTVSLDPTLRNGSDDLPNYDPRLVKRVPSIFPEQIMLALSTTPNSMWVSWVTGDAQIGPKVTPLDPSSVRSEVYYSTKSGVHSLKAEGTSVIYSQTYTNKGLS

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCAACTGTGTTTGTCAGAGGAATA_-_ATGTCTATTCCAACAACATTGCAAGGCCCATTTAAGCCTGTGACTGTGTCCCTCGATCCCACTCTGCGCAATGGAAGCGATGACTTGCCCAACTACGACCCTCGCCTCGTCAAGAGAGTTCCTTCTATCTTCCCAGAGCAAATAATGCTTGCGCTTTCAACTACCCCTAACTCCATGTGGGTTTCTTGGGTAACAGGTGATGCTCAGATCGGACCCAAGGTAACGCCATTGGATCCCTCCTCAGTGAGGAGTGAAGTGTATTACAGCACTAAAAGTGGCGTACACTCCCTTAAAGCTGAAGGGACATCTGTGATCTATAGCCAAACATATACAAACAAGGGCCTTTCGC

Fln Alignment:

GG46A6U02HMA3A___SIPTTLQGPFKPVTVSLDPTLRNGSDDLPNYDPRLVKR-VPSIFPEQIMLALSTTPNSMWVSWVTGDAQIGPKVTPLDPSSVRSEVYYSTKSGVHSLKAEGTSVIYSQTYTNKGL
Q6TPH1_______________TIPTTLDGPFKPLTRRFEPSLRRGSDDLPMDHPRLRKRNVSSDFPEQIALALST-PTSMWVSWVTGDAIVGKDVKPLDPSSIASEVWYGKEKGNYMLKKKGNATVYSQLYPSDGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain