SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71216

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene71216
CGTCGTGACCTTGGCTGTCACTCATGTAGTGGGAATGGAGGCTGGTACATGGACACCTGCAAGTAGGTCTGGATACAATCTCTTCGATGCAGTTTCTCGTTGCACAACCCAGGTGTATCCACAATCATGGACTGCTGTTTCTTTTAACTTTTGATAACGCTAGGAATATGGAACTTGAGGTCAGAAATATGGCCACGCCGATATCTTGGTCAGC

Ace file of the UniGene sp_v3.0_unigene71216

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9SR02_RICCO	-	-	4.0e-15	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Multicopper oxidase, putative	-	-	5.273e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	4.193e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.193e-11	%
Sma3	Metabolic pathways	01100		4.193e-11	%

Source	Gene names
Sma3	AT4G38420; AT4g38420; At1g21850; At1g21860; At4g38420; F22I13.190; F8K7.28; GSVIVT00036246001; Os06g0678800; Os07g0510900; OsI_24168; OsI_26158; OsJ_22366; OsJ_24405; P0003H08.1; P0409B11.36; P0710B08.42; PE; PHYPADRAFT_137307; POPTRDRAFT_552769; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21850.1	sks8 SKU5 similar 8 chr1:7667803-7670530 REVERSE LENGTH=551	4.0e-16	73%
RefSeq	Arabidopsis thaliana	NP_173603.1	SKU5 similar 8 protein [Arabidopsis thaliana]	5.0e-16	73%
RefSeq	Populus trichocarpa	XP_002306213.1	predicted protein [Populus trichocarpa]	3.0e-17	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRP4

Fln msg: Separated hits, possible frame ERROR between 151 and 163, Distance to subject end: 37 aas, your sequence is shorter than subject: 71 - 542

Fln protein: VVTLAVTHVVGMEAGTWTPASRSGYNLFDAVSRCTTQVYPQSWTAVSFNxxxxxGIWNLRSEIWPRRYLGQ

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTAGTGGGAATGGAGGCTGGTACATGGACACCTGCAAGTAGGTCTGGATACAATCTCTTCGATGCAGTTTCTCGTTGCACAACCCAGGTGTATCCACAATCATGGACTGCTGTTTCTTTTAACTTxxxxxxxxxxxxAGGAATATGGAACTTGAGGTCAGAAATATGGCCACGCCGATATCTTGGTCAGC

Fln Alignment:

GG46A6U02F5BDT___VVGMEAGTWTPASRSGYNLFDAVSRCTTQVYPQSWTAVSFNFxxxxGIWNLRSEIWPRRYLGQ
B8LRP4_______________VVGMDGGDWTPANRKGYNLFDAVSRCTTQVYPNSWTAVLLTFxxxxGLWNLRSQTWERQFLGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain