SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71209

Length: 273 nt

UniGene Fasta

>sp_v3.0_unigene71209
CGTCGTGACCTTGGCTGTCACTCAGGATCGTCGAGGATGCCACGGCTGTTATAGCCCTGGTAGCGGGCTGCAGCGAGAGCAGAGAGGCATTTAAAAGGATATTTGGGATTGAAGTTCTGGTGGATTTGTTGGACACTGGGTCTCCGAGGGCCCAAGAGAATGCGGCTTCAGCGTTGCTGAATTTGGTCCAGTGCGGTGGGACGCAGGTCGCTGAGGATATCTTGGATGTCCAGATCGCCATGCCGGCTCTTAGTGTTCTTCTCAACACCGGGA

Ace file of the UniGene sp_v3.0_unigene71209

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	Gene names
Sma3	GSVIVT00030906001; OsJ_04810; POPTRDRAFT_797083; RCOM_1452200; VITISV_005390;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo	IPR000225	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08315.1	ARM repeat superfamily protein chr1:2620500-2621477 REVERSE LENGTH=325	1.0e-14	52%
RefSeq	Arabidopsis thaliana	NP_849613.1	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	2.0e-14	52%
RefSeq	Populus trichocarpa	XP_002299200.1	predicted protein [Populus trichocarpa]	3.0e-18	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB80

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 26 aas, your sequence is shorter than subject: 90 - 297

Fln protein: S*PWLSLRIVEDATAVIALVAGCSESREAFKRIFGIEVLVDLLDTGSPRAQENAASALLNLVQCGGTQVAEDILDVQIAMPALSVLLNTG

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATCGTCGAGGATGCCACGGCTGTTATAGCCCTGGTAGCGGGCTGCAGCGAGAGCAGAGAGGCATTTAAAAGGATATTTGGGATTGAAGTTCTGGTGGATTTGTTGGACACTGGGTCTCCGAGGGCCCAAGAGAATGCGGCTTCAGCGTTGCTGAATTTGGTCCAGTGCGGTGGGACGCAGGTCGCTGAGGATATCTTGGATGTCCAGATCGCCATGCCGGCTCTTAGTGTTCTTCTCAACACCGGGA

Fln Alignment:

GG46A6U02F7VH2___IVEDATAVIALVAGCSESREAFKRIFGIEVLVDLLDTGSPRAQENAASALLNLVQCGGTQVAEDILDVQIAMPALSVLLNTG
D5AB80_______________ILEDATAVIAQVAGCSESEKVFKKIFGIEVLVDLLATGSPRVQENAASALLNLAQCGG--IADDILDVQFAMPALSLLLTSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain