SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71170

Length: 148 nt

UniGene Fasta

>sp_v3.0_unigene71170
CGTCGTGACCTTGGCTGTCACTCACCTCCTTATGTGCTCTCAATTTTCTGATCCAGGGACACAACATGACCGTTGTTGAGGCGGACGGGCACTACGTAGAACCGGTGGCAGTGCGGAATCTGGACGTCTATTCGGGAGAATCGTATTC

Ace file of the UniGene sp_v3.0_unigene71170

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ascorbate oxidase [Solanum lycopersicum]	-	-	4.0e-11	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Putative L-ascorbate oxidase	-	-	6.617e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	3.352e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		3.352e-08	%
Sma3	Metabolic pathways	01100		3.352e-08	%

Source	Gene names
Sma3	AO; AT4g39830; At4g39830; B13-1-1; GSVIVT00011194001; GSVIVT00019442001; GSVIVT00019451001; OSJNBa0062E01.2; Os06g0567900; Os09g0365900; Os09g0507300; OsI_23413; OsI_31082; OsI_31967; OsJ_29093; OsJ_29948; P0441A12.23; P0567G03.40; POPTRDRAFT_567075; POPT

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	L-ascorbate oxidase activity	GO:0008447	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	L-ascorbate oxidase, plants	IPR017760	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39830.1	Cupredoxin superfamily protein chr4:18479103-18481184 FORWARD LENGTH=582	2.0e-15	74%
RefSeq	Arabidopsis thaliana	NP_195693.1	putative L-ascorbate oxidase [Arabidopsis thaliana]	2.0e-15	74%
RefSeq	Populus trichocarpa	XP_002306323.1	predicted protein [Populus trichocarpa]	1.0e-15	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A889

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 288 aas, your sequence is shorter than subject: 48 - 573

Fln protein: S*PWLSLTSLCALNFLIQGHNMTVVEADGHYVEPVAVRNLDVYSGESY

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTCCTTATGTGCTCTCAATTTTCTGATCCAGGGACACAACATGACCGTTGTTGAGGCGGACGGGCACTACGTAGAACCGGTGGCAGTGCGGAATCTGGACGTCTATTCGGGAGAATCGTATTC

Fln Alignment:

GG46A6U02JAMWS___SLTSLCALNFLIQGHNMTVVEADGHYVEPVAVRNLDVYSGESY
D5A889_______________SVASLSSLNFLIQGHKMTVVEADGHYVEPVEVENLDVYSGESY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain