SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71166

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene71166
CGTCGTGACCTTGGCTGTCACTCATCTTGTTGATGAGAAAATTTGGAAGATGGGGTTTGTTGAGGGTAGTTTTTATAATTTGGAATCAAATGCAGCAAAGAGGCTGCAGTCCAGATAAGTGTGCTTATGAGGCTCTCGTCTACGCTCTCAATAAGCGGGGTAGATTCTCTTTAGCTCGCAAGTACAGAGAAGAGATGGTAGCAAGAGGGCTCTCA

Ace file of the UniGene sp_v3.0_unigene71166

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9M8M3.1\|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g80550, mitochondrial; Flags: Precursor gb\|AAF27119.1\|AC018849_7 unknown protein; 31926-33272 [Arabidop	-	-	6.0e-12	48%
FL-Next	sp=Pentatricopeptide repeat-containing protein At1g80550, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Sma3	Chromosome undetermined scaffold_71, whole genome shotgun sequence	-	-	1.298e-07	-

Source	Gene names
Sma3	GSVIVT00011993001; GSVIVT00033964001; GSVIVT00033968001; POPTRDRAFT_1078086; VITISV_027954;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80550.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:30285358-30286704 REVERSE LENGTH=448	2.0e-16	48%
RefSeq	Arabidopsis thaliana	NP_178170.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-16	48%
RefSeq	Populus trichocarpa	XP_002306508.1	predicted protein [Populus trichocarpa]	7.0e-22	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M8M3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 20 aas, your sequence is shorter than subject: 71 - 448

Fln protein: S*PWLSLILLMRKFGRWGLLRVVFIIWNQMQQRGCSPDKCAYEALVYALNKRGRFSLARKYREEMVARGLS

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTTGATGAGAAAATTTGGAAGATGGGGTTTGTTGAGGGTAGTTTTTATAATTTGGAATCAAATGCAGCAAAGAGGCTGCAGTCCAGATAAGTGTGCTTATGAGGCTCTCGTCTACGCTCTCAATAAGCGGGGTAGATTCTCTTTAGCTCGCAAGTACAGAGAAGAGATGGTAGCAAGAGGGCTCTCA

Fln Alignment:

GG46A6U02G00A5___ILLMRKFGRWGLLRVVFIIWNQMQQRGCSPDKCAYEALVYALNKRGRFSLARKYREEMVARGLS
Q9M8M3_______________VMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain