SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71120

Length: 212 nt

UniGene Fasta

>sp_v3.0_unigene71120
CGTCGTGACCTTGGCTGTCACTCAGCTTTGCTGGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCT

Ace file of the UniGene sp_v3.0_unigene71120

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Purple acid phosphatase isoform a1 n=4 Tax=Triticeae RepID=C4PKK7_WHEAT	-	-	1.0e-23	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Phytase	-	-	2.748e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	8.053e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		8.053e-17	%
Sma3	Riboflavin metabolism	00740		8.053e-17	%

Source	Gene names
Sma3	AT1; AT2; At2g32770; At3g07130; F24L7.9; GSVIVT00010414001; GSVIVT00011763001; GSVIVT00020463001; GSVIVT00031672001; LOC_Os03g63074; LOC_Os11g05410; LOC_Os12g05540; OSJNBb0043P23.2; OSJNBb0096M04.130; Os03g0848200; Os08g0280100; Os11g0151800; Os12g0151000

Source	GOs	Term	Type	Identity
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G07130.1	ATPAP15, PAP15 purple acid phosphatase 15 chr3:2255763-2257981 REVERSE LENGTH=532	4.0e-27	75%
RefSeq	Arabidopsis thaliana	NP_187369.1	purple acid phosphatase 15 [Arabidopsis thaliana]	5.0e-27	75%
RefSeq	Populus trichocarpa	XP_002323987.1	predicted protein [Populus trichocarpa]	2.0e-29	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP18

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 70 - 151

Fln protein: VVTLAVTQLCWDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYIVRQPEICAHMTA

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTGCTGGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCT

Fln Alignment:

GG46A6U02FZ49L___QPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYI
B8LP18_______________QPKYSAFREASFGHAILEIKNRTHAFYHWHRNQDGDAVVGDSQWL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain