UniGene Name: sp_v3.0_unigene71104
Length: 217 nt
UniGene Fasta |
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>sp_v3.0_unigene71104
T |
Ace file of the UniGene sp_v3.0_unigene71104 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Histidine kinase 1 plant, putative n=1 Tax=Ricinus communis RepID=B9SUH7_RICCO | - | - | 2.0e-13 | 72% |
FL-Next | sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 70% |
Sma3 | Histidine kinase osmosensor protein | - | - | 5.331e-09 | - |
Source | Gene names |
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Sma3 | At2g17820; GSVIVT00036756001; POPTRDRAFT_593825; POPTRDRAFT_757135; RCOM_0572760; hk1; iK1; |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | two-component sensor activity | GO:0000155 | Molecular Function | 0.0 | - |
Sma3 | two-component response regulator activity | GO:0000156 | Molecular Function | 0.0 | - |
Sma3 | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | - |
Sma3 | osmosensor activity | GO:0005034 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | histidine phosphotransfer kinase activity | GO:0009927 | Molecular Function | 0.0 | - |
Sma3 | two-component signal transduction system (phosphorelay) | GO:0000160 | Biological Process | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | peptidyl-histidine phosphorylation | GO:0018106 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Signal transduction response regulator, receiver domain | IPR001789 | - | 0.0 | - |
Sma3 | Zinc finger, CCHC-type | IPR001878 | - | 0.0 | - |
Sma3 | ATPase-like, ATP-binding domain | IPR003594 | - | 0.0 | - |
Sma3 | Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain | IPR003661 | - | 0.0 | - |
Sma3 | Signal transduction histidine kinase-related protein, C-terminal | IPR004358 | - | 0.0 | - |
Sma3 | Signal transduction histidine kinase, core | IPR005467 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT2G17820.1 | ATHK1, AHK1, HK1 histidine kinase 1 chr2:7743133-7748013 REVERSE LENGTH=1207 | 1.0e-15 | 70% |
RefSeq | Arabidopsis thaliana | NP_565424.1 | histidine kinase 1 [Arabidopsis thaliana] | 2.0e-15 | 70% |
RefSeq | Populus trichocarpa | XP_002327653.1 | histidine kinase osmosensor protein [Populus trichocarpa] | 2.0e-15 | 72% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q9SXL4
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 823 aas, your sequence is shorter than subject: 52 - 1207
Fln protein:
V
Protein Length:
53
Fln nts:
T
Fln Alignment:
GG46A6U02HORPP___VAVVGVRSALSSVDQLMKDLVELHSGYMYLTSQEGHLIATSTDAPLIQ
Q9SXL4_______________VAVVGVTTALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLK
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain