SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71103

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene71103
CGTCGTGACCTTGGCTGTCACTCAAAAAGCAGAAGCGCCGAGATGAGTGAAAGAGAAAGAGCGGCGCTGAACGATTGTATTCAGAATTTCGATGACACCGTTGAGGAGATTCAGAAATCTCTGAAGGAGATGGAGCAGCTGCAGCGCAGCAACTTCAATCCTCAAATGGACGACATGCAGACGTTTATGAGTGCCGCCCTCACCGACCAAGACTCCTGCCTCAACGGATTTCAGGATGTAAAGGC

Ace file of the UniGene sp_v3.0_unigene71103

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	21 kD protein n=1 Tax=Pinus radiata RepID=O65011_PINRA	-	-	2.0e-31	91%
FL-Next	tr=21 kD protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	91%
Sma3	21 kD protein	-	-	6.335e-06	-

Source	Gene names
Sma3	PRE79;

Source	GOs	Term	Type	e value	Identity
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	0.0	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinesterase inhibitor	IPR006501	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002321006.1	predicted protein [Populus trichocarpa]	4.0e-17	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O65011

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 81 - 211

Fln protein: RRDLGCHSKSRSAEMSERERAALNDCIQNFDDTVEEIQKSLKEMEQLQRSNFNPQMDDMQTFMSAALTDQDSCLNGFQDVK

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAGCAGAAGCGCCGAGATGAGTGAAAGAGAAAGAGCGGCGCTGAACGATTGTATTCAGAATTTCGATGACACCGTTGAGGAGATTCAGAAATCTCTGAAGGAGATGGAGCAGCTGCAGCGCAGCAACTTCAATCCTCAAATGGACGACATGCAGACGTTTATGAGTGCCGCCCTCACCGACCAAGACTCCTGCCTCAACGGATTTCAGGATGTAAAGGC

Fln Alignment:

GG46A6U02GB3CF___KSRSAEMSERERAALNDCIQNFDDTVEEIQKSLKEMEQLQRSNFNPQMDDMQTFMSAALTDQDSCLNGFQDVK
O65011_______________KGRSAEMSERERAALNDCIQNFDDTVDEIQKSLKELEQLQRSNFNPQMNDMQTFMSAALTDQGSCLNGFEDVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain