SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71089

Length: 364 nt

UniGene Fasta

>sp_v3.0_unigene71089
CGTCGTGACCTTGGCTGTCACTCATCCTGGGCGCAATGGGGAGGCCATGTCACACATTTGGGGCCACTCAGCCTCTGACAAAACAGAGGAGCAGCAAGTTAGAGAGGAGAGGAAGCAGAGAAGGATGTTGTCTAACAGAGAGTCTGCAAGGAGGTCTAGGCTCCGGAAACAACATCTTGTGGACCAGCTGAGGGCTGAGGTGGATCATTTGAGAGCAGAGAATGGGGAGATATTGAAGAAACTCAACATTACTTCAGCGCATTATGCTCATATAAGAGAAGAGAATTCCCTGTTGAGATCAGAGGCCATGGAGTTGAGTCACAGGCTCCAAAGATTGCAATACACATTAAACGCTCAACCTCAT

Ace file of the UniGene sp_v3.0_unigene71089

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	G-box binding factor 6 [Arabidopsis thaliana] emb\|CAA18838.1\| bZIP transcription factor ATB2 [Arabidopsis thaliana] emb\|CAB80176.1\| bZIP transcription factor ATB2 [Arabidopsis thaliana] gb\|AAL36335.1\| putative bZIP transcription factor ATB2 [Arabidopsis t	-	-	1.0e-15	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	AT4g34590; ATB2; At2g18160; At4g34590; At5g15830; At5g15830/F14F8_210; F14F8_210; GBF5; GBF6; Os08g0487100; OsI_29675; OsJ_27733; P0028A08.8; P0481F05.29; PHYPADRAFT_18955; PHYPADRAFT_37500; POPTRDRAFT_710131; POPTRDRAFT_719591; RCOM_1595650; T4L20.170;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Basic leucine zipper	IPR011700	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34590.1	ATB2, GBF6, AtbZIP11, BZIP11 G-box binding factor 6 chr4:16522449-16522928 FORWARD LENGTH=159	3.0e-21	57%
RefSeq	Arabidopsis thaliana	NP_195185.1	G-box binding factor 6 [Arabidopsis thaliana]	4.0e-21	57%
RefSeq	Populus trichocarpa	XP_002306888.1	predicted protein [Populus trichocarpa]	9.0e-21	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLW5

Fln msg: Distance to subject end: 37 aas, atg_distance in limit (1-15): atg_distance = 16, your sequence is shorter than subject: 106 - 173

Fln protein: MSHIWGHSASDKTEEQQVREERKQRRMLSNRESARRSRLRKQHLVDQLRAEVDHLRAENGEILKKLNITSAHYAHIREENSLLRSEAMELSHRLQRLQYTLNAQPH

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTGGGCGCAATGGGGAGGCC_-_ATGTCACACATTTGGGGCCACTCAGCCTCTGACAAAACAGAGGAGCAGCAAGTTAGAGAGGAGAGGAAGCAGAGAAGGATGTTGTCTAACAGAGAGTCTGCAAGGAGGTCTAGGCTCCGGAAACAACATCTTGTGGACCAGCTGAGGGCTGAGGTGGATCATTTGAGAGCAGAGAATGGGGAGATATTGAAGAAACTCAACATTACTTCAGCGCATTATGCTCATATAAGAGAAGAGAATTCCCTGTTGAGATCAGAGGCCATGGAGTTGAGTCACAGGCTCCAAAGATTGCAATACACATTAAACGCTCAACCTCAT

Fln Alignment:

GG46A6U02FHOGK___MLSNRESARRSRLRKQHLVDQLRAEVDHLRAENGEILKKLNITSAHYAHIREENSLLRSEAMELSHRLQRL
B8LLW5_______________MLSNRESARRSRMRKQQHLDELRAEAAHLRAENNHMLTKFNIASHKYMQLEEENSLLRSYATDLSLKLQSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain