SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71060

Length: 141 nt

UniGene Fasta

>sp_v3.0_unigene71060
CGTCGTGACCTTGGCTGTCACTCAGCTTTGTTCAACAACGGGGCTTAGCTGCGGAGCGTGCTACGAAATGAAATGTATCGATGACCCGCAGTGGTGTTTGCCGGCCAGTGTGACCGTCACAGCGACCAAACTTCTGTCCCG

Ace file of the UniGene sp_v3.0_unigene71060

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	4.0e-09	67%
FL-Next	tr=Expansin; Pinus taeda (Loblolly pine).	-	-	0.0	67%

Source	Gene names
Sma3	EXPA3;

Source	GOs	Term	Type	e value	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	0.0	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40610.1	ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 expansin A8 chr2:16949121-16950472 REVERSE LENGTH=253	2.0e-12	60%
RefSeq	Arabidopsis thaliana	NP_181593.1	expansin A8 [Arabidopsis thaliana]	2.0e-12	60%
RefSeq	Populus trichocarpa	XP_002319409.1	hypothetical protein POPTRDRAFT_834669 [Populus trichocarpa]	1.0e-13	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9SWY1

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 46 - 253

Fln protein: VVTLAVTQLCSTTGLSCGACYEMKCIDDPQWCLPASVTVTATKLLS

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTGTTCAACAACGGGGCTTAGCTGCGGAGCGTGCTACGAAATGAAATGTATCGATGACCCGCAGTGGTGTTTGCCGGCCAGTGTGACCGTCACAGCGACCAAACTTCTGTCCCG

Fln Alignment:

GG46A6U02HI42L___TLAVTQLCSTTGLSCGACYEMKCIDDPQWCLPASVTVTAT
Q9SWY1_______________TAALSTALFNDGLSCGACYEMRCNDDPQWCLPGTVTVTAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain