SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71037

Length: 274 nt

UniGene Fasta

>sp_v3.0_unigene71037
CGTCGTGACCTTGGCTGTCACTCATTGATTATCATATGACTTGGCACCAACAGTCCATTCTGCAAGCAATTGGTTTACTGGATTCAAAAGAGCTGCATGTATTATACATGAGCTTTGTGTCACAACTGCTTTGTGTGGGAGAGTGTCATTGGGCCATATATGTTGTTCTTCACATGCCACCTACAACAGATTATCCAATGCTTCATGAGAAAGTTATCAAAGAAATTTTATGCCAATATTGTGAAACATGGAGTTCAGTTGATACACAAAAGCA

Ace file of the UniGene sp_v3.0_unigene71037

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nucleoporin PRECOZ [Arabidopsis thaliana]	-	-	2.0e-24	60%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	63%

Source	Gene names
Sma3	At1g80680; F23A5.3; GSVIVT00033287001; LOC_Os03g07580; MOS3; Os03g0172000; OsI_10206; OsJ_09594; PHYPADRAFT_144605; POPTRDRAFT_554860; PRE; RCOM_0471030;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nuclear membrane	GO:0031965	Cellular Component	-
Sma3	mRNA export from nucleus	GO:0006406	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S59, nucleoporin	IPR007230	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80680.1	SAR3, MOS3, PRE, NUP96 SUPPRESSOR OF AUXIN RESISTANCE 3 chr1:30324219-30328489 FORWARD LENGTH=1046	3.0e-30	60%
RefSeq	Arabidopsis thaliana	NP_178183.2	suppressor of auxin resistance 3 [Arabidopsis thaliana]	4.0e-30	60%
RefSeq	Populus trichocarpa	XP_002303836.1	predicted protein [Populus trichocarpa]	4.0e-34	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1M679

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 204 aas, your sequence is shorter than subject: 90 - 989

Fln protein: S*PWLSLIDYHMTWHQQSILQAIGLLDSKELHVLYMSFVSQLLCVGECHWAIYVVLHMPPTTDYPMLHEKVIKEILCQYCETWSSVDTQK

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGATTATCATATGACTTGGCACCAACAGTCCATTCTGCAAGCAATTGGTTTACTGGATTCAAAAGAGCTGCATGTATTATACATGAGCTTTGTGTCACAACTGCTTTGTGTGGGAGAGTGTCATTGGGCCATATATGTTGTTCTTCACATGCCACCTACAACAGATTATCCAATGCTTCATGAGAAAGTTATCAAAGAAATTTTATGCCAATATTGTGAAACATGGAGTTCAGTTGATACACAAAAGCA

Fln Alignment:

GG46A6U02IZ4X8___IDYHMTWHQQSILQAIGLLDSKELHVLYMSFVSQLLCVGECHWAIYVVLHMPPTTDYPMLHEKVIKEILCQYCETWSSVDTQK
I1M679_______________LDYHMIWHQRAVLEAVGVINSNDLHILDMSFVSQLLCVGKCHWALYVVLHLPLREDYPYLHVNLIREILFQYCETWSSDESQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain