SustainPineDB

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Assembly info
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71034

Length: 154 nt

UniGene Fasta

>sp_v3.0_unigene71034
CGTCGTGACCTTGGCTGTCACTCATAGTGGTTCAGAATTGTAAAATCGGAACAGGAGACGACTGTGTTTCTATTGTTTCACAGAGCTCAGATATTAAAATCAGCAAGCTAGCGTGCGGTCCTGGGCACGGAATAAGCATTGGAAGTCTGGGCAA

Ace file of the UniGene sp_v3.0_unigene71034

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polygalacturonase [Cucumis sativus]	-	-	4.0e-12	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Pollen allergen	-	-	4.604e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	1.241e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		1.241e-07	%
Sma3	Starch and sucrose metabolism	00500		1.241e-07	%
Sma3	Metabolic pathways	01100		1.241e-07	%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	3.4e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	3.4e-08	%
Sma3	Starch and sucrose metabolism	00500	3.4e-08	%
Sma3	Metabolic pathways	01100	3.4e-08	%

Source	Gene names
Sma3	At1g70500; At3g15720; CUPG1; Cry j 2.1; Cry j 2.2; Cry j 2.3; Cryj2; F24J13.7; F5O8.2; GSVIVT00000358001; GSVIVT00000359001; GSVIVT00002738001; LOC_Os11g14400; MSJ11.12; Os11g0249400; OsI_35700; OsJ_33540; PG; POPTRDRAFT_742328; POPTRDRAFT_753709; POPTRDR

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23460.1	Pectin lyase-like superfamily protein chr1:8327382-8329622 FORWARD LENGTH=460	8.0e-17	72%
RefSeq	Arabidopsis thaliana	NP_173760.2	polygalacturonase [Arabidopsis thaliana]	1.0e-16	72%
RefSeq	Populus trichocarpa	XP_002328587.1	predicted protein, partial [Populus trichocarpa]	5.0e-17	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0V2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 155 aas, your sequence is shorter than subject: 50 - 429

Fln protein: S*PWLSLIVVQNCKIGTGDDCVSIVSQSSDIKISKLACGPGHGISIGSLG

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGTGGTTCAGAATTGTAAAATCGGAACAGGAGACGACTGTGTTTCTATTGTTTCACAGAGCTCAGATATTAAAATCAGCAAGCTAGCGTGCGGTCCTGGGCACGGAATAAGCATTGGAAGTCTGGGCAA

Fln Alignment:

GG46A6U02FFEC7___IVVQNCKIGTGDDCVSIVSQSSDIKISKLACGPGHGISIGSLG
A9P0V2_______________VMIQNCTIATGDDCISIVAESSNIQISELICGPGHGISIGSLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain