SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70839

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene70839
CGTCGTGACCTTGGCTGTCACTCATTCCTGGAGATTTTGAAGCAGTCGGCGAGGGAAATACCAATTTTTCGTTACCAGGCAAATGGGTCAACAGAAATGAGAGAATGAGAAAAAGAAAGACACCCGTTTCCAGGTCCTCTCGCGCTGGTTTGCAGTTTCCAGTGGGGAGAACCCATCGGGAGATGAAGTCTCGCCTGCATGCAAGTATCAGAGTGGGAGCAACTGCAGCTGTGTACATGGCAG

Ace file of the UniGene sp_v3.0_unigene70839

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA	-	-	7.0e-10	65%
FL-Next	sp=Histone H2A; Pinus pinaster (Maritime pine).	-	-	0.0	68%
Sma3	Histone H2A	-	-	3.979e-33	-

Source	Gene names
Sma3	At2g38810; F13I13.4; GSVIVT00023817001; GSVIVT00032564001; GSVIVT00034539001; HTA1501; HTA1502; HTA1506; HTA904; HTA905; HTA906; HTA907; HTA916; LOC_Os03g06670; LOC_Os03g53190; LOC_Os10g28230; OJ1365_D05.1; OJ1607A12.10; OSJNBa0061K21.20; OSJNBb0036F07.3;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54560.1	HTA11 histone H2A 11 chr3:20196532-20197466 FORWARD LENGTH=136	2.0e-14	47%
RefSeq	Arabidopsis thaliana	NP_191019.1	histone H2A [Arabidopsis thaliana]	3.0e-14	47%
RefSeq	Populus trichocarpa	XP_002300810.1	histone 2 [Populus trichocarpa]	1.0e-14	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q84L44

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 46 - 139

Fln protein: MRKRKTPVSRSSRAGLQFPVGRTHREMKSRLHASIRVGATAAVYMA

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCTGGAGATTTTGAAGCAGTCGGCGAGGGAAATACCAATTTTTCGTTACCAGGCAAATGGGTCAACAGAAATGAGAGA_-_ATGAGAAAAAGAAAGACACCCGTTTCCAGGTCCTCTCGCGCTGGTTTGCAGTTTCCAGTGGGGAGAACCCATCGGGAGATGAAGTCTCGCCTGCATGCAAGTATCAGAGTGGGAGCAACTGCAGCTGTGTACATGGCAG

Fln Alignment:

GG46A6U02GBS7R___NRNERMRKRKTPVSRSSRAGLQFPVGRTHREMKSRLHASIRVGATAAVYMA
Q84L44_______________NNNNKDKDKKKPVSRSSRAGLQFPVGRIHRLLKSRISANGRVGATAAVYSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain