SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70838

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene70838
CGTCGTGACCTTGGCTGTCACTCAGGTATCATTTTTCAGAGAGACATGGTCATCCAGCTCAAAGAACAGCTCTTCATGAATAGTTACAAGACAATCGACGGCAGAGGAGCCAATGTCCACATTGCCAACGGTGCCTGCATATCGGTAGAGCACGTGACCAACATTATCATTCACGGGATTCACATCCATGACTGC

Ace file of the UniGene sp_v3.0_unigene70838

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectate lyase, putative n=1 Tax=Ricinus communis RepID=B9RWM7_RICCO	-	-	7.0e-21	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Pectate lyase	-	-	5.25001e-40	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectate lyase.	EC:4.2.2.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		0.0	%

Source	Gene names
Sma3	9612; At1g04680; At1g11920; At1g30350; At1g67750; At3g07010; At3g24230; At3g24670; At3g27400; At3g53190; At4g13210; At4g13710; At4g22080; At4g22090; At4g24780; At5g15110; At5g48900; At5g55720; At5g63180; F12A21.12; F12F1.22; F17N18.100; F18A5.100; F1N20.1

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pectate lyase activity	GO:0030570	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48900.1	Pectin lyase-like superfamily protein chr5:19825240-19828909 FORWARD LENGTH=417	4.0e-27	80%
RefSeq	Arabidopsis thaliana	NP_568705.1	putative pectate lyase 20 [Arabidopsis thaliana]	5.0e-27	80%
RefSeq	Populus trichocarpa	XP_002297822.1	predicted protein [Populus trichocarpa]	2.0e-26	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQV2

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 65 - 242

Fln protein: RRDLGCHSGIIFQRDMVIQLKEQLFMNSYKTIDGRGANVHIANGACISVEHVTNIIIHGIHIHDC

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTATCATTTTTCAGAGAGACATGGTCATCCAGCTCAAAGAACAGCTCTTCATGAATAGTTACAAGACAATCGACGGCAGAGGAGCCAATGTCCACATTGCCAACGGTGCCTGCATATCGGTAGAGCACGTGACCAACATTATCATTCACGGGATTCACATCCATGACTGC

Fln Alignment:

GG46A6U02G21RY___IIFQRDMVIQLKEQLFMNSYKTIDGRGANVHIANGACISVEHVTNIIIHGIHIHDC
B8LQV2_______________IIFQRDMVIMLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHIHDC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain