SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70795

Length: 155 nt

UniGene Fasta

>sp_v3.0_unigene70795
CGTCGTGACCTTGGCTGTCACTCATTTATCATACTCGTGTTTCTATAGGAATGCGTTTTAGAATGCTATTTGAGACAGAAGAGTCGAGTGTTCGCAGGATTTAGTTTCTTACCATGTTTAATGTCTTGGGGTGTTATAACATTGTGAATATATTC

Ace file of the UniGene sp_v3.0_unigene70795

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin response factor 8-1 n=1 Tax=Solanum lycopersicum RepID=E0A8P3_SOLLC	-	-	8.0e-06	79%
FL-Next	sp=Auxin response factor 25; Oryza sativa subsp. japonica (Rice).	-	-	0.0	79%

Source	Gene names
Sma3	ARF25; ARF6; ARF6B; At1g30330; CsARF3; LOC_Os12g41950; MA4_106O17.24; Os12g0613700; OsI_39101; OsJ_035418; POPTRDRAFT_205407; POPTRDRAFT_411997; RCOM_0485460; T4K22.6;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2QM84

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 564 aas, your sequence is shorter than subject: 34 - 899

Fln protein: S*PWLSLIYHTRVSIGMRFRMLFETEESSVRRI*

Protein Length: 35

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATCATACTCGTGTTTCTATAGGAATGCGTTTTAGAATGCTATTTGAGACAGAAGAGTCGAGTGTTCGCAGGATTTAGTTTCTTACCATGTTTAATGTCTTGGGGTGTTATAACATTGTGAATATATTC

Fln Alignment:

GG46A6U02IC21P___WLSLIYHTRVSIGMRFRMLFETEESSVRR
Q2QM84_______________YVKAVYHTRVSVGMRFRMLFETEESSVRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain