SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70746

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene70746
CGTCGTGACCTTGGCTGTCACTCAAATGTAGAGCTAGCAGAAAGTGCAGCAAAACACATTTTTGAGCTGGACCCTGAAAATGCTGGACCTTATGTGCTGCTGTCCAACGTTTATGCTGCAACTGGCAGATGGGATGGTATTGAAAAAGTGCGGAACATGATGAGAGAGAGGGGT

Ace file of the UniGene sp_v3.0_unigene70746

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gb\|EEE57525.1\| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]	-	-	2.0e-11	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At5g39350; GSVIVT00015808001; MUL8.30; OJ1001_D02.30; Os09g0327200; OsI_08374; OsI_30906; OsJ_07836; OsJ_28890; P0706E03.7; PCMP-E16;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39350.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:15750929-15752962 FORWARD LENGTH=677	8.0e-16	61%
RefSeq	Arabidopsis thaliana	NP_198751.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-15	61%
RefSeq	Populus trichocarpa	XP_002324235.1	predicted protein [Populus trichocarpa]	5.0e-15	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 139 aas, your sequence is shorter than subject: 58 - 795

Fln protein: RRDLGCHSNVELAESAAKHIFELDPENAGPYVLLSNVYAATGRWDGIEKVRNMMRERG

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTAGAGCTAGCAGAAAGTGCAGCAAAACACATTTTTGAGCTGGACCCTGAAAATGCTGGACCTTATGTGCTGCTGTCCAACGTTTATGCTGCAACTGGCAGATGGGATGGTATTGAAAAAGTGCGGAACATGATGAGAGAGAGGGGT

Fln Alignment:

GG46A6U02GTYM6___HSNVELAESAAKHIFELDPENAGPYVLLSNVYAATGRWDGIEKVRNMMRERG
B8LQA8_______________HCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain