SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70742

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene70742
CGTCGTGACCTTGGCTGTCACTCATTTTGCTTTTTGAAGAAATGATACTGGCTGGCATGAAGCCAGACCATATCACTTTCATCGGTGTTATATCTGCGTGTAGTCGTGCAGGCCTAGTGGATGAAGGGCGTTACTATTTCGATTCAATGAGTCGAGTCCATTGCATTGAACCAACAGTAGACCATTATGTTTGCATGATTGATCTTCTTG

Ace file of the UniGene sp_v3.0_unigene70742

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SHZ8.1\|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb\|AAD25817.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC07259.1\| pentatricopeptide repe	-	-	4.0e-15	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	At2g13600; At2g22070; At5g52630; F6N7.12; GSVIVT00003900001; GSVIVT00006973001; GSVIVT00016827001; GSVIVT00020348001; GSVIVT00021165001; GSVIVT00024893001; GSVIVT00026234001; GSVIVT00034388001; GSVIVT00035822001; LOC_Os11g29230; OJ1359_D06.22; OSJNBa0006B

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	8.0e-20	61%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-19	61%
RefSeq	Populus trichocarpa	XP_002310592.1	predicted protein [Populus trichocarpa]	7.0e-22	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 225 aas, your sequence is shorter than subject: 69 - 370

Fln protein: S*PWLSLILLFEEMILAGMKPDHITFIGVISACSRAGLVDEGRYYFDSMSRVHCIEPTVDHYVCMIDLL

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGCTTTTTGAAGAAATGATACTGGCTGGCATGAAGCCAGACCATATCACTTTCATCGGTGTTATATCTGCGTGTAGTCGTGCAGGCCTAGTGGATGAAGGGCGTTACTATTTCGATTCAATGAGTCGAGTCCATTGCATTGAACCAACAGTAGACCATTATGTTTGCATGATTGATCTTCTTG

Fln Alignment:

GG46A6U02JZPYI___ILLFEEMILAGMKPDHITFIGVISACSRAGLVDEGRYYFDSMSRVHCIEPTVDHYVCMIDL
A9P0W0_______________VLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain