SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70664

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene70664
CGTCGTGACCTTGGCTGTCACTCATCTTTTGTCTCTGAAGGGCGCAGCAGAGAAGGATATGCAGCTATTAGGATTCAGACAGCGTTCAGAGGATACCTGGCATTGGTTCGTGGACATATCGTGAGAAAGCAAGCAACCGAAACACTGAGGTGTATGCAATCCCTTGTTACGATCCAGGCTAGAGTTCGTGCTCGTAGTCTTCGAATGTCTGAAGGAGGGCAGGCAGGTCAGAGTAAACTTATGCAGAGACGCCACCAGGAATTTCGTCCAAGTAAATCAAGTGAAAGAAGGAACCCAAGCACTGGTAGTTTGAATGAAAGGGAGGAAAGGCACAAAGCAGACAAGATGACC

Ace file of the UniGene sp_v3.0_unigene70664

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Calmodulin binding protein, putative	-	-	8.651e-10	-

Source	Gene names
Sma3	At2g26180; GSVIVT00032189001; GSVIVT00034126001; GSVIVT00037186001; OSIGBa0111L12.1; OSIGBa0139P06.10; OSJNBa0088I22.17; Os01g0194200; Os04g0569900; Os08g0115200; OsI_00748; OsI_17031; OsJ_00724; OsJ_15829; OsJ_25818; P0001B06.11; P0427G12.22; P0671B11.42

Source	InterPros	Term	Type	e value	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	0.0	-
Sma3	Ribosomal protein L34e, conserved site	IPR018065	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26180.1	IQD6 IQ-domain 6 chr2:11143433-11144982 REVERSE LENGTH=416	1.0e-17	56%
RefSeq	Arabidopsis thaliana	NP_180187.1	IQ-domain 6 protein [Arabidopsis thaliana]	2.0e-17	56%
RefSeq	Populus trichocarpa	XP_002298262.1	predicted protein [Populus trichocarpa]	1.0e-19	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS1

Fln msg: Distance to subject end: 423 aas, your sequence is shorter than subject: 117 - 672

Fln protein: RRDLGCHSSFVSEGRSREGYAAIRIQTAFRGYLALVRGHIVRKQATETLRCMQSLVTIQARVRARSLRMSEGGQAGQSKLMQRRHQEFRPSKSSERRNPSTGSLNEREERHKADKMT

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTTGTCTCTGAAGGGCGCAGCAGAGAAGGATATGCAGCTATTAGGATTCAGACAGCGTTCAGAGGATACCTGGCATTGGTTCGTGGACATATCGTGAGAAAGCAAGCAACCGAAACACTGAGGTGTATGCAATCCCTTGTTACGATCCAGGCTAGAGTTCGTGCTCGTAGTCTTCGAATGTCTGAAGGAGGGCAGGCAGGTCAGAGTAAACTTATGCAGAGACGCCACCAGGAATTTCGTCCAAGTAAATCAAGTGAAAGAAGGAACCCAAGCACTGGTAGTTTGAATGAAAGGGAGGAAAGGCACAAAGCAGACAAGATGACC

Fln Alignment:

GG46A6U02HH0F2___RSREGYAAIRIQTAFRGYLA---------------LVRGHIVRKQATETLRCMQSLVTIQARVRARSLRMSEGGQAGQSKLMQRRHQEFRPSKSSERRNPSTGSLNEREERHK
B8LKS1_______________RIREESAAIKAQTAFRGYLARRAFRALRGLIRLQALVRGHMVRRQAAGSLRCLQAIIRLQALVRAHQVRMSEQGLAVQERLEYRRRQNPSRGNELERKSSSIFVVNSASRSEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain