SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70625

Length: 260 nt

UniGene Fasta

>sp_v3.0_unigene70625
CGTCGTGACCTTGGCTGTCACTCAGTAGCTCAGGATGATTCAATTTCATGGAAGACTGCTGTCTGGTTTTGGATGTTTGGATAGCAATTGCCACTCCGCTATTACATCCGGGCAAGGATTCGGGGCAACTATTAAAGCAATCAATTCCGGAGAATGCAATGGCGGCAACTCTCCTGCAGTTACTGACCGTGTGAATTATTACAATAATTACTGCGGTCAGTTTGGAGTAGATCCCGGAAGCAATGTCAGCTGTTAAGAAT

Ace file of the UniGene sp_v3.0_unigene70625

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class IV chitinase 4-5 n=2 Tax=Pseudotsuga menziesii RepID=D7P711_PSEMZ	-	-	5.0e-25	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Class IV chitinase	-	-	2.158e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	4.691e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		4.691e-14	%

Source	Gene names
Sma3	At2g43590; At3g47540; Bcchi; CHB4; Ch4; Ch4A; Chi4; Chi4D; Cht; Cht2; EP3; F1P2.90; GSVIVT00034623001; GSVIVT00034628001; GSVIVT00034634001; GSVIVT00034636001; GSVIVT00034642001; NaCHIT1; NtChitIV; OJ1058_F07.19; OSIGBa0103O01.6; OSJNBb0091E11.12; Os02g06

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43590.1	Chitinase family protein chr2:18081592-18082749 REVERSE LENGTH=264	5.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_181887.1	chitinase-like protein [Arabidopsis thaliana]	6.0e-19	72%
RefSeq	Populus trichocarpa	XP_002339637.1	predicted protein, partial [Populus trichocarpa]	4.0e-17	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP79

Fln msg: Overlapping hits, possible frame ERROR between 75 and 68, your sequence is shorter than subject: 86 - 229

Fln protein: RRDLGCHSVAQDDSISWKTAVWxxxxLDSNCHSAITSGQGFGATIKAINSGECNGGNSPAVTDRVNYYNNYCGQFGVDPGSNVSC*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAGCTCAGGATGATTCAATTTCATGGAAGACTGCTGTCTGGxxxxxxxxxxxxTTGGATAGCAATTGCCACTCCGCTATTACATCCGGGCAAGGATTCGGGGCAACTATTAAAGCAATCAATTCCGGAGAATGCAATGGCGGCAACTCTCCTGCAGTTACTGACCGTGTGAATTATTACAATAATTACTGCGGTCAGTTTGGAGTAGATCCCGGAAGCAATGTCAGCTGTTAAGAAT

Fln Alignment:

GG46A6U02JPLEW___VAQDDSISWKTAVWxxxLDSNCHSAITSGQGFGATIKAINSGECNGGNSPAVTDRVNYYNNYCGQFGVDPGSNVSC
A9NP79_______________VAQDDSISWKTAVWxxxLNSNCHSAITSGQGFGATIQAINGRECNGGDSDSVTDRVNYYNNYCSQFGVDPGSNVRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain