SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70591

Length: 415 nt

UniGene Fasta

>sp_v3.0_unigene70591
CGTCGTGACCTTGGCTGTCACTCATTTCACGATGATCGGCAATCCCTCTTGGAATTTAAGAAGCTCGTCACCAGCGATCTTCATAATTCCATGGCCTATTGGAGCGTTGCAGTCACTTTGTGTAACTGAACTGGTATTACCTGTAGCTGTCGCCATCGACTGAGAGTGGTTGCTCTCGTCCCTAGTTCCAGGGATCTGGGATGATCTATTCCTCCTTCCCTTGGCAATTTGTCATTTCTCCGCTCACTCGATCTTTCGAGCAACGCGTTCTTCGGTCATATCCCAGTTCAATTGGGACGCCTCTTTCGTTTGAAGAAGCTCAGTTTGTTCGACAATCAGTTGGAAGGAAAGATACCATATCAACTCAGCAGTTGCAGACGTCTGACATTCTTGGAGCTCTCGTTCAACATTTTGA

Ace file of the UniGene sp_v3.0_unigene70591

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RH25_RICCO	-	-	4.0e-22	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	AT3G47580; AT5G20480; At3g47580; F1P2.130; GSVIVT00017170001; LRR-RLK; Os02g0211200; OsI_05514; OsI_05515; OsI_06350; OsI_23501; OsJ_05040; OsJ_05862; OsJ_05865; P0017C12.12; VITISV_011744; VITISV_011849;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	-
Sma3	detection of bacterium	GO:0016045	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47580.1	Leucine-rich repeat protein kinase family protein chr3:17532687-17535810 FORWARD LENGTH=1011	2.0e-26	46%
RefSeq	Arabidopsis thaliana	NP_190342.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	3.0e-26	46%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 230 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 138 - 551

Fln protein: RRDLGCHSFHDDRQSLLEFKKLVTSDLHNSMAYWSVAVTLCN*TGITCSCRHRLRVVALVPSSRDLG*SIPPSLGNLSFLRSLDLSSNAFFGHIPVQLGRLFRLKKLSLFDNQLEGKIPYQLSSCRRLTFLELSFNIL

Protein Length: 139

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCACGATGATCGGCAATCCCTCTTGGAATTTAAGAAGCTCGTCACCAGCGATCTTCATAATTCCATGGCCTATTGGAGCGTTGCAGTCACTTTGTGTAACTGAACTGGTATTACCTGTAGCTGTCGCCATCGACTGAGAGTGGTTGCTCTCGTCCCTAGTTCCAGGGATCTGGGATGATCTATTCCTCCTTCCCTTGGCAATTTGTCATTTCTCCGCTCACTCGATCTTTCGAGCAACGCGTTCTTCGGTCATATCCCAGTTCAATTGGGACGCCTCTTTCGTTTGAAGAAGCTCAGTTTGTTCGACAATCAGTTGGAAGGAAAGATACCATATCAACTCAGCAGTTGCAGACGTCTGACATTCTTGGAGCTCTCGTTCAACATTTTGA

Fln Alignment:

GG46A6U02F1JLX___LEFKKLVTSDLHNSMAYWSVAVTLCN*TGITCSCRHRLRVVALVPSSRDLG*SIPPSLGNLSFLRSLDLSSNAFFGHIPVQLGRLFRLKKLSLFDNQLEGKIPYQLSSCRRLTFLELSFNIL
B8LRW5_______________MEFKATLSLDPNKALSGWNTSVSLCSWTGVQCSLRHQ-RVVSLNLTGMGLQGPISPLLANLSFLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain