SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70461

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene70461
CGTCGTGACCTTGGCTGTCACTCATGATCTAGAGCCTGAAGATTCTGGATATTATGTGCTCTTGTCAAACATTTATGCTGCAGCTGGTAGGTGGGATAATGTGGAAAAATGAGAACATTAATGAGGGATAGACGAGTGAATAAGACACCAGGATGCAGCTTCATTGAGGATAAAAGCAAGGTTCATGCATTTGTTGTCGGTGACAGGTCACACCCTCAATCTGAGGAAATTTATGAAATGTTGAAGA

Ace file of the UniGene sp_v3.0_unigene70461

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide-like helical [Medicago truncatula]	-	-	9.0e-16	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	GSVIVT00024629001; VITISV_006669;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08070.1	OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein chr1:2514374-2516599 REVERSE LENGTH=741	2.0e-16	51%
RefSeq	Arabidopsis thaliana	NP_172286.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-16	51%
RefSeq	Populus trichocarpa	XP_002324235.1	predicted protein [Populus trichocarpa]	9.0e-18	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Overlapping hits, possible frame ERROR between 109 and 103, Distance to subject end: 102 aas, your sequence is shorter than subject: 82 - 370

Fln protein: VVTLAVTHDLEPEDSGYYVLLSNIYAAAGRWDNxxxxRTLMRDRRVNKTPGCSFIEDKSKVHAFVVGDRSHPQSEEIYEMLK

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATCTAGAGCCTGAAGATTCTGGATATTATGTGCTCTTGTCAAACATTTATGCTGCAGCTGGTAGGTGGGATAATxxxxxxxxxxxxAGAACATTAATGAGGGATAGACGAGTGAATAAGACACCAGGATGCAGCTTCATTGAGGATAAAAGCAAGGTTCATGCATTTGTTGTCGGTGACAGGTCACACCCTCAATCTGAGGAAATTTATGAAATGTTGAAGA

Fln Alignment:

GG46A6U02JQTQK___DLEPEDSGYYVLLSNIYAAAGRWDNVxxMRTLMRDRRVNKTPGCSFIEDKSKVHAFVVGDRSHPQSEEIYEMLK
A9P0W0_______________ELTPENPGTYVLLSNIYAAAGRWDDAxxVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain