SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70400

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene70400
CGTCGTGACCTTGGCTGTCACTCAATTGTAGGGTGGGACGACTGGGATCAAACTAGTAAAGAAGGAACTGCGTTCTTCAGTCTGTATAATTGTTATGGTCCAGGAGCTCAAGCTGCCCGTCAGATTTCATGGGCTCACGAGTTGACACCAACGCAGGCTCAACTGTTCCTGGTCAAAAGTTTCATCAATGGCAGGCATTGGCTTGCGGATAGTGATTAGCTATGCAGGCGCACACC

Ace file of the UniGene sp_v3.0_unigene70400

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase (Fragment) n=2 Tax=Picea RepID=A5X524_PICAB	-	-	5.0e-26	81%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Pectinesterase	-	-	3.123e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	1.93e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	1.93e-16	%
Sma3	Starch and sucrose metabolism	00500	1.93e-16	%
Sma3	Metabolic pathways	01100	1.93e-16	%

Source	Gene names
Sma3	25.t00020; 26.t00027; ARATH68; At5g47500; GSVIVT00009598001; MNJ7.9; PME2; PME68; POPTRDRAFT_415166; RCOM_1060550;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G47500.1	Pectin lyase-like superfamily protein chr5:19271262-19272845 REVERSE LENGTH=362	1.0e-21	60%
RefSeq	Arabidopsis thaliana	NP_199561.1	putative pectinesterase 68 [Arabidopsis thaliana]	2.0e-21	60%
RefSeq	Populus trichocarpa	XP_002303355.1	predicted protein, partial [Populus trichocarpa]	6.0e-20	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRK3

Fln msg: your sequence is shorter than subject: 73 - 344

Fln protein: RRDLGCHSIVGWDDWDQTSKEGTAFFSLYNCYGPGAQAARQISWAHELTPTQAQLFLVKSFINGRHWLADSD*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTAGGGTGGGACGACTGGGATCAAACTAGTAAAGAAGGAACTGCGTTCTTCAGTCTGTATAATTGTTATGGTCCAGGAGCTCAAGCTGCCCGTCAGATTTCATGGGCTCACGAGTTGACACCAACGCAGGCTCAACTGTTCCTGGTCAAAAGTTTCATCAATGGCAGGCATTGGCTTGCGGATAGTGATTAG___CTATGCAGGCGCACACC

Fln Alignment:

GG46A6U02I703P___IVGWDDWDQTSKEGTAFFSLYNCYGPGAQAARQISWAHELTPTQAQLFLVKSFINGRHWLADSD
B8LRK3_______________IAGWDDWAQTSKDGTVFFGLYNCYGPGARAAQQISWVHELTPAQAQPFLVKTFINGRHWLEDRD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain