SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70396

Length: 284 nt

UniGene Fasta

>sp_v3.0_unigene70396
CGTCGTGACCTTGGCTGTCACTCAGGGGTGATTTTCAATTTTTACTTGCATTGAAATGAAGGATTGGGAATAGCCCAGAGATGCACAAAGCTCCCCAGAGAAGCTGATCAAACAGGTCATCCTTGCAACTCGGAAAGATGGGTCTCTCTAGCCGGGAAGAATGCTCTTCCAAGATTGGATCAAGATGCATACAATCAGATCGTTAGAAATGGTCATAACACCATAGTGGAACCCATGTGTGCATTCACTTCTGATTTGAGAATGAGCTACCATTTGTTCCAGCC

Ace file of the UniGene sp_v3.0_unigene70396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-amylase n=1 Tax=Picea sitchensis RepID=A9NVE4_PICSI	-	-	3.0e-15	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23920.1	BAM1, BMY7, TR-BAMY beta-amylase 1 chr3:8641722-8644199 FORWARD LENGTH=575	6.0e-11	66%
RefSeq	Arabidopsis thaliana	NP_189034.1	beta-amylase 1 [Arabidopsis thaliana]	8.0e-11	66%
RefSeq	Populus trichocarpa	XP_002311706.1	predicted protein [Populus trichocarpa]	2.0e-13	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD77

Fln msg: Overlapping hits, possible frame ERROR between 142 and 142, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 49 aas, your sequence is shorter than subject: 94 - 210

Fln protein: VVTLAVTQG*FSIFTCIEMKDWE*PRDAQSSPEKLIKQVILATRKDxxSLAGKNALPRLDQDAYNQIVRNGHNTIVEPMCAFTSDLRMSYHLFQ

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGTGATTTTCAATTTTTACTTGCATTGAAATGAAGGATTGGGAATAGCCCAGAGATGCACAAAGCTCCCCAGAGAAGCTGATCAAACAGGTCATCCTTGCAACTCGGAAAGATxxxxxxTCTCTAGCCGGGAAGAATGCTCTTCCAAGATTGGATCAAGATGCATACAATCAGATCGTTAGAAATGGTCATAACACCATAGTGGAACCCATGTGTGCATTCACTTCTGATTTGAGAATGAGCTACCATTTGTTCCAGCC

Fln Alignment:

GG46A6U02INCSQ___FTCIEMKDWE*PRDAQSSPEKLIKQVILATRKDGVSLAGKNALPRLDQDAYNQIVRNGH--------NTIVEPMCAFTSDLRMSYHLF
D5AD77_______________FTCIEMKDWEQPGDAQCSPEKLIKQVILATRKAGVPLAGENALPRFDQDAHNQIIRNANLRLPEDSGNTTVEPMCAFTY-LRMSQHLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain