SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70358

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene70358
CGTCGTGACCTTGGCTGTCACTCAATTCTTACTTTGGGTACGTTGCTTCGTGTCAAAATATGGATCCCTACAAGAATTACATGTCTGGATTGGGCTATGGGCTCTCCTGGGATCTGGTGGAGTGGATCCAGAATTCTCCCATTGCTAGGAATAAGAGTGAAGGTACGGAGGAT

Ace file of the UniGene sp_v3.0_unigene70358

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	56%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57500.1	Galactosyltransferase family protein chr5:23286406-23287525 REVERSE LENGTH=318	3.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_200558.1	Galactosyltransferase family protein [Arabidopsis thaliana]	4.0e-13	50%
RefSeq	Populus trichocarpa	XP_002325062.1	predicted protein [Populus trichocarpa]	6.0e-16	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IM04

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 75 aas, your sequence is shorter than subject: 57 - 320

Fln protein: S*PWLSLNSYFGYVASCQNMDPYKNYMSGLGYGLSWDLVEWIQNSPIARNKSEGTED

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTACTTTGGGTACGTTGCTTCGTGTCAAAATATGGATCCCTACAAGAATTACATGTCTGGATTGGGCTATGGGCTCTCCTGGGATCTGGTGGAGTGGATCCAGAATTCTCCCATTGCTAGGAATAAGAGTGAAGGTACGGAGGAT

Fln Alignment:

GG46A6U02H0M5I___YFGYVASCQNMDPYKNYMSGLGYGLSWDLVEWIQNSPIARNKSEGTED
B9IM04_______________YYGYVIPCPSMDPFVHYMSGMGYMISWDIVEWIRDSEVPKNHLEGPED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain