SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70350

Length: 336 nt

UniGene Fasta

>sp_v3.0_unigene70350
CGTCGTGACCTTGGCTGTCACTCAATTTCAAAGAACCCAGTCATGCATTCAAAGACCAAGCATATACCTATCAAATATCATTTTCTTCAGGAACAAGTGCTTGAAAAAAAGGTTAAGTTGGAGTATGTTCCTTCTAAGGAACAAGTTGTTGATATACTCAACAAACCATTGCCTAGGGAGACCTTCGAATACCTCAGGCAAAAGTTGGGGGTAATTGATGTATCATCTTGTTATTGAATCTCATATGTTTAGAGATTGTCGGTTGTACGCGAGTTTCATATGGGGTATATGAGTACATTTTCTGGTTTATGGATTGGTCGAAGATCAAATGGCACA

Ace file of the UniGene sp_v3.0_unigene70350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative Zea mays retrotransposon Opie-2 n=2 Tax=Oryza sativa Japonica Group RepID=Q8H7T1_ORYSJ	-	-	4.0e-14	55%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	34%

Source	Gene names
Sma3	VITISV_001332; VITISV_002108; VITISV_002211; VITISV_004170; VITISV_008809; VITISV_009528; VITISV_009574; VITISV_012324; VITISV_012647; VITISV_013713; VITISV_013966; VITISV_014220; VITISV_017340; VITISV_019176; VITISV_019713; VITISV_019857; VITISV_019893;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Chloroplast envelope membrane protein, CemA	IPR004282	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: your sequence is shorter than subject: 79 - 1328

Fln protein: RRDLGCHSISKNPVMHSKTKHIPIKYHFLQEQVLEKKVKLEYVPSKEQVVDILNKPLPRETFEYLRQKLGVIDVSSCY*

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCAAAGAACCCAGTCATGCATTCAAAGACCAAGCATATACCTATCAAATATCATTTTCTTCAGGAACAAGTGCTTGAAAAAAAGGTTAAGTTGGAGTATGTTCCTTCTAAGGAACAAGTTGTTGATATACTCAACAAACCATTGCCTAGGGAGACCTTCGAATACCTCAGGCAAAAGTTGGGGGTAATTGATGTATCATCTTGTTATTGA___ATCTCATATGTTTAGAGATTGTCGGTTGTACGCGAGTTTCATATGGGGTATATGAGTACATTTTCTGGTTTATGGATTGGTCGAAGATCAAATGGCACA

Fln Alignment:

GG46A6U02IUE0I___ISKNPVMHSKTKHIPIKYHFLQEQVLEKKVKLEYVPSKEQVVDILNKPLPRETFEYLRQKLGV
P10978_______________LSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain