SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70218

Length: 417 nt

UniGene Fasta

>sp_v3.0_unigene70218
CGTCGTGACCTTGGCTGTCACTCAGGGCAGGTGGCGGGTCGATGGTTGGCGCTGTTCTTGGTTCAACCAAACAAGAACCGCTCGTCGTCGGGAAGCCGTCGACATTCATGATGGACTACCTGGCAAAGAAGTTTGGAATCACAACATCTCAGATATGCATGGTAGGTGACCGTTTGGATACTGACGTTCTATTTGGGCAAAATGGAGGCTACAAAACTCTTCTGGTTCTTTCAGGTGTGACTTCTGAGCAGATGCTTCAAAGCCCCGACAACAAAATCCAGCCAGATTTCTACACAAACCAAATTTCTGATTTTCTCACCCTTAAAACAGCAGCAGTATGAACAGTAATGTGAACGGACTATTTTACCTTGGGAGGCCCATCACTTTTGTATAGCAACGAAGAGATCACAGGGATGG

Ace file of the UniGene sp_v3.0_unigene70218

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] ref\|NP_198485.2\| 2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana] ref\|NP_001119316.1\| 2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana] ref\|NP_001119318.1\|	-	-	3.99931e-42	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Phosphoglycolate phosphatase	-	-	1.381e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	4-nitrophenylphosphatase.	EC:3.1.3.41	-	2.143e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		2.143e-11	%

Source	Gene names
Sma3	At5g36700; At5g36790; At5g36790/f5h8_20; At5g47760; At5g47760/MCA23_8; B1077E10.18-1; CHLREDRAFT_196298; GSVIVT00004697001; GSVIVT00004877001; GSVIVT00007983001; MICPUCDRAFT_36042; MICPUN_96626; OSIGBa0130B08.3; OSJNBa0076N16.12; OSJNBa0084K20.14; OSTLU_3

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	4-nitrophenylphosphatase activity	GO:0003869	Molecular Function	-
Sma3	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	phosphatase activity	GO:0016791	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	2-phosphoglycolate phosphatase, eukaryotic	IPR006349	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIA	IPR006357	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G36700.1	ATPGLP1, PGLP1 2-phosphoglycolate phosphatase 1 chr5:14421929-14424430 REVERSE LENGTH=362	81%
RefSeq	Arabidopsis thaliana	NP_001190428.1	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002315115.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 113 - 372

Fln protein: S*PWLSLRAGGGSMVGAVLGSTKQEPLVVGKPSTFMMDYLAKKFGITTSQICMVGDRLDTDVLFGQNGGYKTLLVLSGVTSEQMLQSPDNKIQPDFYTNQISDFLTLKTAAV*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGCAGGTGGCGGGTCGATGGTTGGCGCTGTTCTTGGTTCAACCAAACAAGAACCGCTCGTCGTCGGGAAGCCGTCGACATTCATGATGGACTACCTGGCAAAGAAGTTTGGAATCACAACATCTCAGATATGCATGGTAGGTGACCGTTTGGATACTGACGTTCTATTTGGGCAAAATGGAGGCTACAAAACTCTTCTGGTTCTTTCAGGTGTGACTTCTGAGCAGATGCTTCAAAGCCCCGACAACAAAATCCAGCCAGATTTCTACACAAACCAAATTTCTGATTTTCTCACCCTTAAAACAGCAGCAGTATGA___ACAGTAATGTGAACGGACTATTTTACCTTGGGAGGCCCATCACTTTTGTATAGCAACGAAGAGATCACAGGGATGG

Fln Alignment:

GG46A6U02H6BZO___AGGGSMVGAVLGSTKQEPLVVGKPSTFMMDYLAKKFGITTSQICMVGDRLDTDVLFGQNGGYKTLLVLSGVTSEQMLQSPDNKIQPDFYTNQISDFLTLKTAAV
A9NVC8_______________AGGGSMVGALRGSTQKDPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPSNSIQPDFYTNKVSDLLIKKAANV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain