SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70196

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene70196
CGTCGTGACCTTGGCTGTCACTCATGCATGCTAGAAAGCACATATGTGGAATGACCGACGATAGTGTTAATGATGCGCCTGCGCTAAAGAAGGCAAACATAGAAATTATTGTTGTTCATGCAAATGATGCGAAAAAGCATACATATAGCCCTTTCAATCTTGCTCAATCCATTTGTTGTTAGGTAATTTGCAATGTATCTGCAGACCCCGGCAGGGACTACCACCAGGGCAGTGGCTCCTTGTTTTCACATGTATTAAGTGCTAGCTTGAGTTGGAATTTGAATTAGGAGGTATGTATGCTTTGCTACATTCAATAGTCAATACACCAATATTGA

Ace file of the UniGene sp_v3.0_unigene70196

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plasma membrane H+ ATPase [Oryza sativa Indica Group]	-	-	1.0e-06	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 269 aas, your sequence is shorter than subject: 60 - 955

Fln protein: S*PWLSLMHARKHICGMTDDSVNDAPALKKANIEIIVVHANDAKKHTYSPFNLAQSICC*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCATGCTAGAAAGCACATATGTGGAATGACCGACGATAGTGTTAATGATGCGCCTGCGCTAAAGAAGGCAAACATAGAAATTATTGTTGTTCATGCAAATGATGCGAAAAAGCATACATATAGCCCTTTCAATCTTGCTCAATCCATTTGTTGTTAGGTAATTTGCAATGTATCTGCAGACCCCGGCAGGGACTACCACCAGGGCAGTGGCTCCTTGTTTTCACATGTATTAAGTGCTAGCTTGAGTTGGAATTTGAATTAGGAGGTATGTATGCTTTGCTACATTCAATAGTCAATACACCAATATTGA

Fln Alignment:

GG46A6U02GFY4E___MHARKHICGMTDDSVNDAPALKKANIEIIVVHANDAKK
B8LQS1_______________LQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAAR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain