SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70111

Length: 360 nt

UniGene Fasta

>sp_v3.0_unigene70111
CGTCGTGACCTTGGCTGTCACTCAGTCATTCTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACAAGTTCAATGGCCTAGCATGGCTCTTCTTGGGAGTTCCAACCAGCAGCTCTCTACTCTACCCAGAGGAGTTTGGAAAGATGAAGACGAAGGCGCCGGACAACTTCCGGGTCGACTACGCCATCAGCAGGGAGGAGACCAATGCGGCCGGAGAGAAGATGTACATCCAGACCAGGATGGCAGAGTACAAGGATGAGCTGTGGGAGCTCCTGAAGAAGGACAACACCTATGTGTACATGTGTGGACTTAAGGGCATGGAGAAGGGTATTGATGAGATCATGGTTCCATTGGCTGC

Ace file of the UniGene sp_v3.0_unigene70111

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ferredoxin-NADP(H) oxidoreductase [Triticum aestivum]	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Sma3	Ferredoxin--NADP reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ferredoxin--NADP(+) reductase.	EC:1.18.1.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Photosynthesis	00195		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AT1G20020; AT5G66190; At1g20020; At1g30510; At4g05390; At5g66190; C6L9.70; CT166; F26G16.13; FNR; FNRA; GSVIVT00014406001; GSVIVT00036774001; K2A18.27; L-FNRI; L-FNRII; LFNR1; LFNR2; LOC_Os06g01850; LOC_Os07g05400; OJ1435_F07.32-1; OJ1435_F07.32-2; Os02g0

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	thylakoid membrane	GO:0042651	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ferredoxin-NADP+ reductase activity	GO:0004324	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	poly(U) RNA binding	GO:0008266	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	GO:0045156	Molecular Function	-
Sma3	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	GO:0045157	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	Ferredoxin-NADP+ reductase	IPR012146	-	-
Sma3	Ferredoxin Reductase	IPR015701	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66190.1	ATLFNR1, FNR1 ferredoxin-NADP(+)-oxidoreductase 1 chr5:26451203-26453012 REVERSE LENGTH=360	81%
RefSeq	Arabidopsis thaliana	NP_001078805.1	ferredoxin--NADP+ reductase [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002304324.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNX5

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 119 - 382

Fln protein: VVTLAVTQSFLWKMFFEKYEDYKFNGLAWLFLGVPTSSSLLYPEEFGKMKTKAPDNFRVDYAISREETNAAGEKMYIQTRMAEYKDELWELLKKDNTYVYMCGLKGMEKGIDEIMVPLA

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCATTCTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACAAGTTCAATGGCCTAGCATGGCTCTTCTTGGGAGTTCCAACCAGCAGCTCTCTACTCTACCCAGAGGAGTTTGGAAAGATGAAGACGAAGGCGCCGGACAACTTCCGGGTCGACTACGCCATCAGCAGGGAGGAGACCAATGCGGCCGGAGAGAAGATGTACATCCAGACCAGGATGGCAGAGTACAAGGATGAGCTGTGGGAGCTCCTGAAGAAGGACAACACCTATGTGTACATGTGTGGACTTAAGGGCATGGAGAAGGGTATTGATGAGATCATGGTTCCATTGGCTGC

Fln Alignment:

GG46A6U02HXI8N___LAVTQSFLWKMFFEKYEDYKFNGLAWLFLGVPTSSSLLYPEEFGKMKTKAPDNFRVDYAISREETNAAGEKMYIQTRMAEYKDELWELLKKDNTYVYMCGLKGMEKGIDEIMVPLA
A9NNX5_______________IAPFRGYLWKMFFEKHPDYKFNGLAWLFLGVPTSSSLIYKEEFEKMKEKSPDKIRVDFAVSREQTNEKGEKMYIQTRMGEYAKELWGLFKKENTYVYMCGLKGMEKGIDDIITSLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain