SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70089

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene70089
CGTCGTGACCTTGGCTGTCACTCATTTTGGAAAGGTATTAATTGAGACCGACAATTACACTTCACCAGCACAGGTGTTTATTTCAGAGGATGGAGTGAGTAATGCGAGAGCGAGGGTCCTGGGAGGCGGAACTGCTATCAATGCGGGCTTCTACAGCAGGGCCAGCTCCCAATATGTCAGTAATGTCGGGTGGGACGAGGGACTTGTAGAGGAGTCGTATGAATGGGTGGAGAAGCAGGTTGCCTT

Ace file of the UniGene sp_v3.0_unigene70089

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TW84_VITVI	-	-	1.0e-19	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Protein HOTHEAD	-	-	1.086e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:4.1.2.1-	-	1.21e-15	-

Source	Gene names
Sma3	ACE; At1g12570; At1g14185; At1g14190; At1g72970; At1g73050; At3g56060; At5g51950; F18O21_20; F3N23.17; F7A19.27; F7A19.28; GSVIVT00001080001; GSVIVT00012397001; GSVIVT00012398001; GSVIVT00015723001; GSVIVT00034174001; HTH; LOC_Os03g02700; LOC_Os10g38050;

Source	GOs	Term	Type	Identity
Sma3	oxidoreductase activity, acting on CH-OH group of donors	GO:0016614	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	alcohol metabolic process	GO:0006066	Biological Process	-
Sma3	cell-cell signaling	GO:0007267	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	fatty acid omega-oxidation	GO:0010430	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	-
Sma3	Glucose-methanol-choline oxidoreductase	IPR012132	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14190.1	Glucose-methanol-choline (GMC) oxidoreductase family protein chr1:4852802-4854307 FORWARD LENGTH=501	4.0e-25	60%
RefSeq	Arabidopsis thaliana	NP_172871.1	glucose-methanol-choline oxidoreductase-like protein [Arabidopsis thaliana]	5.0e-25	60%
RefSeq	Populus trichocarpa	XP_002315048.1	predicted protein [Populus trichocarpa]	8.0e-24	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXU5

Fln msg: Distance to subject end: 384 aas, your sequence is shorter than subject: 81 - 558

Fln protein: VVTLAVTHFGKVLIETDNYTSPAQVFISEDGVSNARARVLGGGTAINAGFYSRASSQYVSNVGWDEGLVEESYEWVEKQVA

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGAAAGGTATTAATTGAGACCGACAATTACACTTCACCAGCACAGGTGTTTATTTCAGAGGATGGAGTGAGTAATGCGAGAGCGAGGGTCCTGGGAGGCGGAACTGCTATCAATGCGGGCTTCTACAGCAGGGCCAGCTCCCAATATGTCAGTAATGTCGGGTGGGACGAGGGACTTGTAGAGGAGTCGTATGAATGGGTGGAGAAGCAGGTTGCCTT

Fln Alignment:

GG46A6U02HYDU9___FGKVLIETDNYTSPAQVFISEDGVSNARARVLGGGTAINAGFYSRASSQYVSNVGWDEGLVEESYEWVEKQVA
A9NXU5_______________YGKVLLETDNYTSPAQAFISEDGVSSARARVLGGGTAINAGFYSRASSDYVSNAGWDEGLVEESYEWVEKQNA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain