SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70066

Length: 257 nt

UniGene Fasta

>sp_v3.0_unigene70066
CGTCGTGACCTTGGCTGTCACTCATTTCTTTCCTTGCGGACCTCAAGCTTGGTCACTATATGAAAATTCCTCCACGTTGTATGTACGCTGCTCAGCTTGTGGGCACACTTCTAGCAGGCGTGGTGAATCTGGTTGTTGCTTGGTGGATGCTGGAATCTATAGATAACATCTGTAATGTGGAAGTCTTTACCTCCTGACACGCCCAGTGGACATCGTACCAAAGTACAGAGTAACTATTTGATCAATCTGTCTAGTTT

Ace file of the UniGene sp_v3.0_unigene70066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative oligopeptide transporter protein n=1 Tax=Oryza sativa Japonica Group RepID=Q850L6_ORYSJ	-	-	9.0e-21	69%
FL-Next	sp=Oligopeptide transporter 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Sma3	Oligopeptide transporter OPT family	-	-	4.6e-13	-

Source	Gene names
Sma3	12.t00046; At4g10770; At4g16370; At5g64410; B1053A04.20-1; FCAALL.72; GSVIVT00004656001; GSVIVT00008168001; GSVIVT00015060001; GSVIVT00015061001; GT1; LOC_Os03g54000; MA4_112I10.26; MSJ1.25; OPT3; OPT4; OPT7; OSJNBa0032E21.14; OSJNBa0038F22.19; OSJNBa0047

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oligopeptide transporter activity	GO:0015198	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16370.1	ATOPT3, OPT3 oligopeptide transporter chr4:9247514-9250071 REVERSE LENGTH=737	6.0e-25	83%
RefSeq	Arabidopsis thaliana	NP_567493.5	oligopeptide transporter [Arabidopsis thaliana]	8.0e-25	83%
RefSeq	Populus trichocarpa	XP_002323123.1	oligopeptide transporter OPT family [Populus trichocarpa]	7.0e-26	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23482

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 150 aas, your sequence is shorter than subject: 65 - 737

Fln protein: S*PWLSLISFLADLKLGHYMKIPPRCMYAAQLVGTLLAGVVNLVVAWWMLESIDNICNVEVFTS*

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTTCCTTGCGGACCTCAAGCTTGGTCACTATATGAAAATTCCTCCACGTTGTATGTACGCTGCTCAGCTTGTGGGCACACTTCTAGCAGGCGTGGTGAATCTGGTTGTTGCTTGGTGGATGCTGGAATCTATAGATAACATCTGTAATGTGGAAGTCTTTACCTCCTGACACGCCCAGTGGACATCGTACCAAAGTACAGAGTAACTATTTGATCAATCTGTCTAGTTT

Fln Alignment:

GG46A6U02I6WHC___ISFLADLKLGHYMKIPPRCMYAAQLVGTLLAGVVNLVVAWWMLESIDNICNVE
O23482_______________LSFLADLKLGHYMKIPPRCMYTAQLVGTVVAGVVNLGVAWWMLESIQDICDIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain