SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69997

Length: 479 nt

UniGene Fasta

>sp_v3.0_unigene69997
CGTCGTGACCTTGGCTGTCACTCATTCCTCGTTGGGTTACTTAAGTAACCTCACCTGGCTAGATCTGTCGGACAATCAACTCACTGGAACTCTTCCGGTCTCAAACGGAAGCCAGCCTGGATTAGACAAACTCCGCGCTGCACAGCACTTCCACTTCAACAAAAACAAACTTACAGGTTCCATCCCATCTAATCTTTTCAACGCTGATATCGGACTATTACACGTCAGGCTATTTGATAGCAATAATTTTTCTGGGGAGATCCCATCTACTTTAGGGCTTGTACAAACCTTGGAAGCCTTAAACTCTTTAGTTGGTCAGATTCCAACCAACATCAGCAATCTGAAATCTCTCAATGAGCTACAGCTTTCAAATAATAACCTGAGCCAATCGATTCCAGACTTATCTGGGCTAACTTATCTCCAATATCTGGACTTGAGCAACAATGACTTCAGTTGATCAGTAACTTTCCCCCTTTCGC

Ace file of the UniGene sp_v3.0_unigene69997

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat protein kinase-like protein n=2 Tax=Arabidopsis RepID=Q8GY50_ARATH	-	-	2.0e-34	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Receptor protein kinase-like	-	-	1.269e-11	-

Source	Gene names
Sma3	AT1G79620; AT5G49760; AT5G49770; At1g79620; At1g79620/F20B17_5; At5g49760; At5g49760/K2I5_13; At5g49780; GSVIVT00033612001; GSVIVT00035379001; GSVIVT00035380001; LOC_Os03g21230; LOC_Os11g36090; LOC_Os12g10740; LRR-RLK; OJ1004_E02.6; Os01g0816600; Os05g048

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79620.1	Leucine-rich repeat protein kinase family protein chr1:29957633-29962174 REVERSE LENGTH=971	5.99994e-41	56%
RefSeq	Arabidopsis thaliana	NP_178080.2	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	8.00001e-41	56%
RefSeq	Populus trichocarpa	XP_002328823.1	predicted protein [Populus trichocarpa]	3.0e-39	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 650 aas, your sequence is shorter than subject: 152 - 946

Fln protein: VVTLAVTHSSLGYLSNLTWLDLSDNQLTGTLPVSNGSQPGLDKLRAAQHFHFNKNKLTGSIPSNLFNADIGLLHVRLFDSNNFSGEIPSTLGLVQTLEALNSLVGQIPTNISNLKSLNELQLSNNNLSQSIPDLSGLTYLQYLDLSNNDFS*

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCTCGTTGGGTTACTTAAGTAACCTCACCTGGCTAGATCTGTCGGACAATCAACTCACTGGAACTCTTCCGGTCTCAAACGGAAGCCAGCCTGGATTAGACAAACTCCGCGCTGCACAGCACTTCCACTTCAACAAAAACAAACTTACAGGTTCCATCCCATCTAATCTTTTCAACGCTGATATCGGACTATTACACGTCAGGCTATTTGATAGCAATAATTTTTCTGGGGAGATCCCATCTACTTTAGGGCTTGTACAAACCTTGGAAGCCTTAAACTCTTTAGTTGGTCAGATTCCAACCAACATCAGCAATCTGAAATCTCTCAATGAGCTACAGCTTTCAAATAATAACCTGAGCCAATCGATTCCAGACTTATCTGGGCTAACTTATCTCCAATATCTGGACTTGAGCAACAATGACTTCAGTTGATCAGTAACTTTCCCCCTTTCGC

Fln Alignment:

GG46A6U02GGXXE___VTHSSLGYLSNLTWLDLSDNQLTGTLPVSNGSQPGLDKLRAAQHFHFNKNK-LTGSIPSNLFNAD----IGLLHVRLFD-----------------SNNF--SGEIPSTLGLVQTLEAL----NSLVGQIPTNIXXXXXXXXXXXXXXXXXXXI-PDLSGLTYLQYLDLSNNDFS
C0PTA1_______________ILSSSLGSLSFLKTLDLSANNLTGGIP------PEFGRLKALRTLDLTFNEMLGGSVPKSLLNCTHLKWIGLANINLTGTIPTEFGRLVELEHLDLSSNYYLSGSIPTSLGNCTSLSHLDLSNNSLSGHIPPTLGNCISLSHLHLSENSLSGHIPPTLGNCTSLSHLDLSGNSLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain