SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69991

Length: 413 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene69991
GCGAAAACTAAGGGATGAGCCATTAGATCATGTATTACTTTTTGGCCCTCCAGGATTAGGTAAAACGACACTTTCAAATATTATTGCTAATGAAATGGAAGTCAATATAAGAACTGTATCTGGTCCATCATTAGAGCGACCTGGAGATTTAGCGGCAATTTTATCTGGGTTACAACCTGGTGATGTTTATTTATTGATGAAATTCATCGCTTAAGTAGTGTAGTAGAAGAAGTTTTATACTCTGCTATGGAGGATTTTTTCTTAGATATTATTATCGGTAAAGGTGATGAAGCACGTAGTATACGTATTGATTTACCACCTTTTACTCTAGTAGGTGCGACAACACGTGCTGGAAGTTTAACAGGCCCTTTAAGAGATCGATTTGGTGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene69991 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Staphylococcus aureus RepID=RUVB_STAAB	-	-	0.0	98%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	77%

Source	Gene names
Sma3	OsI_37802;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	four-way junction helicase activity	GO:0009378	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	DNA helicase, Holliday junction RuvB type	IPR004605	-	-
Sma3	DNA helicase, Holliday junction RuvB type, C-terminal	IPR008823	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A2ZIZ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 387 aas, your sequence is shorter than subject: 50 - 443

Fln protein: MEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVE*

Protein Length: 51

Fln nts: GCGAAAACTAAGGGATGAGCCATTAGATCATGTATTACTTTTTGGCCCTCCAGGATTAGGTAAAACGACACTTTCAAATATTATTGCTAATGAAATGGAAGTCAATATAAGAACTGTATCTGGTCCATCATTAGAGCGACCTGGAGATTTAGCGGCAATTTTATCTGGGTTACAACCTGGTGATGTTTATTTATTGATGAAATTCATCGCTTAAGTAGTGTAGTAGAAGAAGTTTTATACTCTGCT_-_ATGGAGGATTTTTTCTTAGATATTATTATCGGTAAAGGTGATGAAGCACGTAGTATACGTATTGATTTACCACCTTTTACTCTAGTAGGTGCGACAACACGTGCTGGAAGTTTAACAGGCCCTTTAAGAGATCGATTTGGTGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

GG46A6U02F5LDR___MEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGV
A2ZIZ7_______________MVDYQLDIMIGEGPTARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain